RNA id: TU92461


Basic Information

Item Value
RNA id TU92461
length 1388
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G74052
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38281437 ~ 38283517 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agcgaaggaggaggaggaggaagaggacgacGACGACCAGAAAATAAaacgaaagagagagagagagaaaaaaaagtgtgcataAACAGAGGGATAGGAGGAGCGCTTTATTTTAGCCCTGGGTTTAAAGTCGACGCGATTGCTAGGggggggaaagggagagaaTAACGCGGGtgcacttattttttattttattttattttatatatttttggaaggGGCGATAGAGGATGCTGTGTTTTGGAACGACGTGAGGAGATTGCGTTTTTTGTATTATGAGGATGGGAGTTTcgttattaattaatttcccaaGCTGCGTTTGATTGAGAAGGACCGACTCTGTCTCCCTGGCGCCCCGGGTTCACGCCGGGAGATTTGGAGACGTGCTCCCCCGGTCGCCGGTGCATGTTGGCCCCGGACGGTCGGGCGCTATGCGACGGCGCGGCGAGGGAGCTTCAACCGAGGAAGGGTAAACGACACCCCGGCGTTTGAGGAGACAGGGCTCACCGCCTGCTGCTTTCACcacacagagacccacagaTACACATCCCTGTCCTGTGTGGATCTGAGAGAGAATctggcaaaaataaatcagcaacAACCACAATcaaaagcgagagagagagagagagagagagagaaaaaatcatTGTGGGAGAATAGTTATCGATGGCTTTGCTGCACCGCGATGGCGAGTCGCAGTCCTTATCCGCAATGAACATTTGAGACACCAAATACAGGCGATGGATAATTCTAGTTTTCTACAGCTGAGTTGTTCACAGGGAAGAGGCAGCTTTTATGGAaaacacagagaggcagagggagagatgcagaaacaaacacagagatggACACAGTGatggagaaacagagagagatggagaaacacacaagcacacagagagagatggagacgtAAAGATATGAATTGAGCAAGagattgctttggcaatacacTGTTTATGGGATACCAATAAAGCACATTGAATTGAAAATTGagtctaaaatgtatattctgtattttcGTTCCCCGTTACTGTATTCTTGAGCACTAGACGTGCCTCTCAATGCTTCTGCAACACTGAAGACacttagtcatgccaataaagcttttttcaatttgaattggaatttgAGTGATAGAGAGAACACACTACCAGAGACACGTACACACCACACACTTACACTGTCTCGTTCACACTCGCTtggacacacactctcacacacacaattgctCAGTTATACACTTActgcacactcactcacacacacacacacactcacttacaAATGAgagaccattcgacccatcatgaaCATAAACACTCACATGCtcgcactcactcactcacacacacacatacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92433 lncRNA downstream 100839 38177974 ~ 38180598 (-) True G74030
TU92434 lncRNA downstream 100839 38180047 ~ 38180598 (-) False G74030
TU92368 lncRNA downstream 209820 38063347 ~ 38071617 (-) True G73980
TU92314 lncRNA downstream 437094 37843170 ~ 37844343 (-) False AMCG00014865
TU92299 lncRNA downstream 454735 37826479 ~ 37826702 (-) True G73918
TU92512 lncRNA upstream 25568 38309085 ~ 38340216 (-) True G74093
TU92501 lncRNA upstream 59805 38343322 ~ 38350291 (-) True G74087
TU92504 lncRNA upstream 59805 38343322 ~ 38350291 (-) False G74087
TU92556 lncRNA upstream 204745 38488262 ~ 38488479 (-) True G74128
TU92567 lncRNA upstream 222675 38506192 ~ 38575968 (-) True G74137
AMCG00014883 mRNA downstream 17953 38261530 ~ 38263484 (-) True AMCG00014883
AMCG00014879 mRNA downstream 121350 38141907 ~ 38160087 (-) True AMCG00014879
AMCG00014878 mRNA downstream 152692 38126043 ~ 38128745 (-) True AMCG00014878
AMCG00014874 mRNA downstream 229325 38047486 ~ 38052112 (-) True AMCG00014874
AMCG00014875 mRNA downstream 241386 38037363 ~ 38040051 (-) True AMCG00014875
AMCG00014885 mRNA upstream 19535 38303052 ~ 38317017 (-) True AMCG00014885
AMCG00014886 mRNA upstream 46614 38330131 ~ 38339363 (-) True AMCG00014886
AMCG00014888 mRNA upstream 80385 38363902 ~ 38402794 (-) True AMCG00014888
AMCG00014889 mRNA upstream 131885 38415402 ~ 38423841 (-) True AMCG00014889
AMCG00014891 mRNA upstream 205102 38488619 ~ 38492954 (-) True AMCG00014891
TU92296 other downstream 497862 37779333 ~ 37783575 (-) True G73916
TU92209 other downstream 956130 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 1887944 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 2027250 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 2099086 36101358 ~ 36182351 (-) True G73604
TU92499 other upstream 59805 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 128643 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 148746 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 206806 38490323 ~ 38490940 (-) False AMCG00014891
TU92596 other upstream 313851 38597368 ~ 38644538 (-) False G74160

Expression Profile