RNA id: TU92477


Basic Information

Item Value
RNA id TU92477
length 2111
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G74067
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38311476 ~ 38313617 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aatttgtaatgattgatgcctttattgaactgtatttttgcactttgttttgcaatgtgtggaaatctgcactacaacGCACTCCATGGCTTCCTTACAGAGAAGCAcataagtgtataatatgtgcagtgcaataaactaccacaaatctacagctggtatatTAACCCACCTagaagccaaacacccttctgtgaaATGAGCAAtgacaggaaaagaaagaagagcaacaaacacattaattttacatacacagccagctattgctattattttttatttgctgtaacTCGAGCACACAGTTGTATTTCCGAATGTAGACGGCATGTAgactaatgttaaggcattttcattgcagctcacattgcaaaactggcaattgaatgaaaatgtataaaaattgaaaaagaaaaagatattgGTCAGTCAGTTACagatgtaattgcaaaatattccttcataaacaaatagtcacaacctttatcgttaattgttAGGCAACAATAATacgagagttgacaggtctgccgttattatgccatttccatacgtcttctaataatgcatttttacattttgtgtaacaatttgtgatagagacatgTATGTTTTGCTGCTTTGCTGAGATCTAGCTGAAGAGAACTatgtgcggtttgtttacattgcgtctttgctggcgtTTGTGCATCTGCAGAAGATAggcatggtattgaccaatggaaaggacgttactgtctgtcatcatccctagagattatattttttacccaatccAAAGGACCTCTCTCGGCAGTTGTCCGATGATGCACTGCTGCGAGAGCAGTGGTCAGagtgcagatgagagagagaaagagacttttacattgtagcttataaacaattacttttaatgacaacaacattcattttaattacttttaagggccttaagaaaatattttgaaatgtactgacTTTTAATGATGGGTGGAAACTCCGAGAAGGTActagcactgaagaggaagaggagtataaAGAGTGACAATGTGTCaacatataacaccccttctcatgtgtttgtttagtgtgtttatacagatccccattagctgccatgttattgcatatgtgattgattcatttgaaaacaagGCTCCCGTACAGTCTCTACTTACAAGTGTTATATTTCAATAGAATGCGatgttttggtcaaagaccttataacacttgcaagtagaaacagtGTGTGAGAGCATGTTTCTTCTATCCAAATCCTTTTCCCTCAAACACATCTGTCTAGAGTCTATACAGGTATGcgattagcttttgttattgtgattgattcattacctgaataaatgtaatgttttaacatgttcacgaCACATacgcaccctcatgcatttctggtgatgtttacctttggctggtaaaaataccaagtggctggtaagttttttccttcttccagACACAGTGTCTACaggccaaaaaagttaattttatcccctgatCCCAATGCCTCATACTGCAGCAGAGAGACTAATGGTTATTGACATCACACACCTACACTCCTCATTTGCTTTCTATCAAATACCACTCACAGCGGCCTGATTGGAGTCAGTATATACCTGCGTATGCCCTCAAACTACAGCactgggagggagggggagagaaatgaagaaagatggatggagagtgagagagagagatgaagagagaaggagggagggagagtgagagagagagatggagagaggaggGCAGCTCCTACCCAGCTGTGCGAGGCGGAGCAGTTCGTCCTCGTTGTCCACTGTGTGTGGACAGCCGATCTGGCTCACCTGGTTCTGCCGGTCACTGGAGCACTTACACAGCAGCACACGATTACTGCCTGAAAGGGGGAAGAGGAAGAGCAGAACTGGTCAAACAGAATCAGACATACACAttggagccagtgctgtgtggactatagtatagtgtagtatagggGATTCGTACCCACGTTGGCGACGTAGAGCTTGTTGTTGAGGATCAGTGCCACAGCGGCTGTAGCCCCCCCTGACacctcctgctccagctcccTCAGACGTTCTGAGTTCTTCTGATACTGAGGGGAGAGCTGATGAAACGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92327 lncRNA upstream 378681 37932522 ~ 37932795 (+) True G73944
TU92322 lncRNA upstream 426788 37876261 ~ 37884688 (+) True G73939
TU92298 lncRNA upstream 490114 37821086 ~ 37821362 (+) True G73917
TU92294 lncRNA upstream 565289 37745983 ~ 37746187 (+) True G73914
TU92269 lncRNA upstream 602675 37708286 ~ 37708801 (+) True G73889
TU92590 lncRNA downstream 335305 38648922 ~ 38649249 (+) True G74157
TU92592 lncRNA downstream 337780 38651397 ~ 38655398 (+) True G74159
TU92634 lncRNA downstream 398091 38711708 ~ 38712076 (+) True G74192
TU92637 lncRNA downstream 400048 38713665 ~ 38714115 (+) True G74195
TU92644 lncRNA downstream 419101 38732718 ~ 38751366 (+) True G74202
AMCG00014880 mRNA upstream 54059 38252962 ~ 38257417 (+) True AMCG00014880
AMCG00014881 mRNA upstream 67336 38234697 ~ 38244140 (+) True AMCG00014881
AMCG00014882 mRNA upstream 83647 38220521 ~ 38227829 (+) True AMCG00014882
AMCG00014877 mRNA upstream 131020 38177874 ~ 38180456 (+) True AMCG00014877
AMCG00014876 mRNA upstream 135310 38169869 ~ 38176166 (+) True AMCG00014876
AMCG00014884 mRNA downstream 37630 38351247 ~ 38359131 (+) True AMCG00014884
AMCG00014887 mRNA downstream 144752 38458369 ~ 38466227 (+) True AMCG00014887
AMCG00014890 mRNA downstream 240355 38553972 ~ 38572905 (+) True AMCG00014890
AMCG00014892 mRNA downstream 315504 38629121 ~ 38642517 (+) True AMCG00014892
AMCG00014893 mRNA downstream 329437 38643054 ~ 38646942 (+) True AMCG00014893
TU92227 other upstream 793070 37518108 ~ 37518406 (+) True G73850
TU91690 other upstream 2916827 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 3351029 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 3530886 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 4072076 34238934 ~ 34239400 (+) True G73292
TU92541 other downstream 118757 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 497076 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 1022651 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 1293270 39606887 ~ 39621186 (+) True AMCG00014913
TU93044 other downstream 1551465 39865082 ~ 39872003 (+) False AMCG00014923

Expression Profile