RNA id: TU92504


Basic Information

Item Value
RNA id TU92504
length 5722
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G74087
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38343322 ~ 38350291 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcagatttttaaaattttatttttgtattgaacaTCTCAAATTAGCCAGGAGCCAGATGGAAAGCACAACGATGCTCAAGCAGTCTCCTCTTTGGCCAGCCGGTCCTTCTTGAGTGGTCCCTGCAAGAGAAAAGAATCACTCATTTAACTGTAGCTGTACACTATTAAATCTCTATTGGTCTTCAATGGCCAGTCACAAGGTACTAAGCTGTAACAACTGCACCAATGAGTGATACAAGGAAGCAAGTCAACTTAAAAGGAGAGAATGTCCCCAGCCAGATAACAGGAAAGGCTGCGTATAACACACAGCTCCCCTGTATCTCGCGGGGGTGGTGGATCACTGTAGCACTGGAATGGAACCCAGTACCAGATCACAGACTGAGTACAGGTTACGATCAGTgcagagggtgggggggggggacttgAAGGTAATACAGGAGGGTCCCCAAGAGCTATGAGTAGAGGTTCAGCACTGTTAAGTCCCCTTACAGGGAGTTGGAACATAAAGATGcaaatgtgcgtgtgtgtgtgtggaggggggctCTTCAGCCCCCCAGTCAGCTTCCACTAAACATGCCATGCTTGCTTTAAAGCCCACTCACCACCCcacttcaaaaacaatattaagCTACTGTGACTCGGCCTCAATAAAAGAGGAGCAAGGGAAGgaccagagagagaaaaaaataagataaaagaTATGGGGGGGACGGGGACTAGGCCAACACTGCCTGGGGGGCATCTCCAACTACAGCTGCATCAGGTCAGGGGTTGAGACACTCATTAATGCAGTTTCCACTGGTGGACGCTTAAACcggcgtccgtgttttgtggacggttaacttgctggtgctagacgtgtACATAAGCGCCGTCCCGCCccctgaggacatgattcactttcagattTGGAGGTGacttgacttgagacacagggaagagatcagatgcattgtgtcagaagatataatctcaagtgccgtgtgcgatcacaaagaaattgcagttttattagcagcatggagtgaaaaccacatacagaaacaatgactgcttacagttaatatcagagtattaaaaacttggatttcacaggaccggtgcagtgccgtgactagttaaaaacaaactgaaggataataaatcGGATCATAGCAGCcgattaatattttatgaacagctggacggtgtttcaggctgtgttttgtgaatggtgtacAGGACAATCTgcagacaatcagtatgaaggagaacacgattcagttaacgtgcccatttacaacataaattaataaataaataaatacagcagatctgggtttcccctctaataaatgcatccataaatgccatgactgagacgcaaacactttagttaaattaaacctgctatattgtatctggattaTTAAtagtgaaacgtgtgtattttgtttaaactgtaacttgccctggttaaggacgtctgataagtaaattaaaatacagcaagTAGTATCATTTGTagttacaaatctgtaagaataaattaagggagtcgcactgtgccgtttaaaaaaaaatctactagCACAAATTACTATAATAACAATACAgatttgatatttattattgttgcacatggaaccgtattcttatgtgaacatgcttgtctgaatataatgtctaCATATTTAGCTCTTCccaatatctctgaacagaaacgtgtatttattacgcggtttacaatcatgtaaaacacaaataaaaccgacacaaaagtcctctccatgTCAGGCTGTGAcactcgtagtgttgttctctgtctcggttttaaaaatgaaaccgaaaccaaacccacagtcgctgctcctcccatcagagggacggacttcacaatggcctggttttgcaaaaaaggctctgggacgcgtctgaggacggacGCGTCCGGCATGGCacggatgcttaagccagtggaaccaagGGATTAGACAAGGTTATGAAGTGGTTCCAATTTGTCAGCCAATGCCCATCATAAGGATAGAGACCATAGTGTTATTGTGAACAGGGTGGACTGATTAACCTCCTCATTAACTGCCAGGGAATGGAGCCCCCCCCTCCATACACTGCCCACCACCATAGTGGGGGGGACAGACTCACCATGAACGCCTTCTTCTCCTCAACAGTCTGGAAGCGGCCGTGCCCGAATTTGGAGGTGGTATCGATGAACTTGAGGTCGATCTTCTCCAGAGCACGACGGCTGGTCTGCACCAGCAGGGACTGAGTGAAAGGGAGGGAACAAGAGTCAGCTGGAGTGGCTCTTGGTAAGCCAGGCACGGTGGGTTATAGAGTCTTAAGGCTGGCTTATACTTCTGcatctgcgtctctgcgtacatgCGCAGGCGTCATACGCAGATGTTATcacagctgtctgccaacatacttgcaagCAAGAGTGACATCCATAGGGGGCAGTATCACATTAACAATCTACAGAAAACTAAACCTGATTTCTATGGTGCACATACAACTATGGGTTTAAATTATCACAGTTAATAACACGTTATTTTACTACAAAAACTACACGTACACACAAATTGCATCATGTATGTGCAGATTATCCATtatcttgctatagttggctagacacttaacactagaacatacatacacacctctGCATGTGAATTTTtcctgcatatccgttcttatagGTTACTATACATTTGAATTAGATACTTATGGCATTTCTGCCGTTAAgactcctcaaaattaatgagctaAAAATACGTTCTTCTCCAACCACCAGACCCACAGTTTATGCGATAGGCTATAGCCCACTGAATAATATACTATGgccgacaatatgggctttgtaatcaaattagtaattgtgaaagatttataaaacatgttgaTTGAAGAAACTAAATGATCGATATATGATGTGTAGCAaatattgtattagatttgtaCTCTATATCGCGAtcgtctgatcggctcagcaagtttctaactttcatTTGGAATTCGATCCTGATCATGCTGtaaacccgggtctctggatcaatgtctTGATCAGTCACcagtttgatcatgaatgctaattgttaATTCCATCCACAGAAagcaaaagtacattttacctttcatCCAAAATTGCCACGCACAAAATAAGTGGGCATTTCAagggataaaatgtgaattatgttcacgaaaTGTGAAGTTTGAGGGACAAAACGCTCATTATGTGGACAAATTAGTTttgtggatgcattttaaatactttggcATGTCACATCCGTTTCTCTGCAGCGGCACCTACACAGACGCATCGCACAAGTCACCCCAGCACTAAGCGATTGGCCGCAGGTCTTGGAATGGCTGAGCAGCAATAGATCAGCACTTGCATGACGCACTGTTGAGATTTCAGAGGCGTGCGCGTCAGTGGGCCTCTGCAGGCTAtacttacccagaaacccctgtATCACTACACAGAGACGCATACATGTacctacgcagaagtataaatcggcctTTAGAGAGCCAGGTGCGGTGCTGTAGTCAGTGCAGTGAAAGCAGGCTGCAGGTTTACCTTGCGCAGAGTCAGCACTCTCTTCTTGGTCCCAACCACACAGCCCTTCAGCATCAGGAAGTCATTGGTCACCTCACCATAGTGCACAAAGCCACCCTACAGAGGAGAGGGgcattaacaatacaaaaaaaaaaaaaaaaaaaaaaaaagctacccTCCACAAAAGATGGGACAGCAGCATAATGCACAGGATACAGCCAGCTCTTCATCCTTCCCACCCCAACAACTTCCCCATCTCACCAGTGGGTTGATGCTCTTGTCAGACAGGTCATACTCTGTGGCTGCATTGCACTTGACCAGTTTTCCATCCTTGGTGTGGTAGCCCTGACCAATCTTGTAgatTACcttcttgtttatttctgtgcGGTGGTGGTAGCCCTTCTGGCCAGCCCTAGCCACAGAGAACGCCACACGGGCAGGATGCCAGGCTCCAATACAGGCCACCTTACGCAGCCCACGGTGAGTCTTCCTGGGCAGCTTCTTAGTGTGCCAACGGCTGGTCACACctTGTAGCCTTTGCCCTTGGTGACTCCGATGACGTCAATCATCTCATCTTGGGTGAAGACATTGGCGATTGGCACAGACTGCTCCAGCTTCTCACGGGCCCAGTCCACCTTGTCAGATATGGAGCCACCATTCAGCTGGATCTCCATCAGGTGAGACTTCTTCTGGCGCAAGGGCAGCAGACgcatctgagagagggagggaaggaagaagggagagggtcaCGAAACCAATTCTCATGGCCTTATTGCATAGCCTAGGTTTTCTTGGCATAAGCGTGCGAGTATTGGCATGTTCTCAGAAGGAAGGCAGCATGGAAAGTCTCCTCACATGTGTCGGGCACCCTGCCAGGTGCAGTGATCCGTGTTCTCATCACCGATCACACCAACATACCACACACCGAGCAGAGTAGTACACGTTTCTTTTAACAGGGCTTACCTGCGTGTGGGCAATGATGCGGATGACCTGGCAGTACTTCTTCATGGATGCAAAGTCCTTCTCCAGCTGCTTCTTGCCCTCCTCATCCTGCCACTTCTTGCAGTACTTGGTGAAGGCCTTCTTCTTGGACTTGTACCTAAAGGATGGGGGGCAGTGAGGAATGGGGGAGGAGCCCAGAGATCAGACGAGGAAGAGGATTGGCACCACCCCTTCATGGCTCACGAAGAGCCAGCGGAAGGGTGAGGTGCCCCCACTGGCGCCCTCTAGAGGCAGAGAGGCAGCTAGCAGGGGGGCTCTTGGCACAGCATCTCAGCTCGGACGCAATAAGCCAGCGGAGCCCCACAGCTCATCGAGACCTAGGGGAGGCCTGAGAGGAGCTGCTTCAaggggagggagtggggggagGAGGGTAATCGTTAATACACAAGATACCAAATCTGGAATAAAAACTGAACCGAGATAAGGTACTGCTTTTGAAAAGGTGACTCCCGGATGTCCAAAACTAGTCCTAGCAAACAGAACCCTAGACCAGACATTAAAATCTTGAATTAATTGCTTCCTGAGCTTGCAATTCCAATCCCATTTAGATTAAAATACAGCATACTGACTACGGCCCGTTACATGTAAATCACCAGAGTGTTTGAGCCATATTacaacccccaccaccccttCCAGTTGTGATGTGTTCAGGAAGCAGGAATCCCAGCATTGATGCCCCAGTAGGAAAGGGGACACTGGGACAGGTGTGGGCCGCTCACCAGTTCTTGTAAAAGCGGCGCTTGCACTCATCGCTGATGTGCTCAGCGAACACGGTCTTGAAGGAGCGCAGGCCACGGGGTGTGTGCACGTAGCCCACCACTCCCACCACCATCATGGGTGGGGTCTCCACCACAGTCACGGCCTCCACAACTTCCTTCTTATTCACCTGGAGCCAGGTCGGTCCACCTCTCTCACGATGTGGGTCATGCCAGCCTTGTAGCCCAGGAAGGCGGTGAGGTGCACAGGCTTGCTGGGGTCATCCTTGGGGAAGCTCTTGACCTTGCCGCGGTGTCTACGACTTCTCTTGCGGGGCAGGAAGCCCAAAGAGCCGTGACGAGGGGCCGAAAACTTACGGTGAgactggagggggagaaagTGGGGTTAAAAACAccaatgtttaaacaaaataaacgcCATAGACAAATCAACCATATTTCGTTTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92512 lncRNA downstream 3106 38309085 ~ 38340216 (-) True G74093
TU92461 lncRNA downstream 59805 38281437 ~ 38283517 (-) True G74052
TU92433 lncRNA downstream 162724 38177974 ~ 38180598 (-) True G74030
TU92434 lncRNA downstream 162724 38180047 ~ 38180598 (-) False G74030
TU92368 lncRNA downstream 271705 38063347 ~ 38071617 (-) True G73980
TU92556 lncRNA upstream 137971 38488262 ~ 38488479 (-) True G74128
TU92567 lncRNA upstream 155901 38506192 ~ 38575968 (-) True G74137
TU92594 lncRNA upstream 289874 38640165 ~ 38644538 (-) False G74160
TU92593 lncRNA upstream 290385 38640676 ~ 38644538 (-) True G74160
TU92608 lncRNA upstream 298631 38648922 ~ 38649290 (-) True G74167
AMCG00014886 mRNA downstream 3959 38330131 ~ 38339363 (-) True AMCG00014886
AMCG00014885 mRNA downstream 26305 38303052 ~ 38317017 (-) True AMCG00014885
AMCG00014883 mRNA downstream 79838 38261530 ~ 38263484 (-) True AMCG00014883
AMCG00014879 mRNA downstream 183235 38141907 ~ 38160087 (-) True AMCG00014879
AMCG00014878 mRNA downstream 214577 38126043 ~ 38128745 (-) True AMCG00014878
AMCG00014888 mRNA upstream 13611 38363902 ~ 38402794 (-) True AMCG00014888
AMCG00014889 mRNA upstream 65111 38415402 ~ 38423841 (-) True AMCG00014889
AMCG00014891 mRNA upstream 138328 38488619 ~ 38492954 (-) True AMCG00014891
AMCG00014894 mRNA upstream 250130 38600421 ~ 38629200 (-) True AMCG00014894
AMCG00014895 mRNA upstream 326118 38676409 ~ 38688061 (-) True AMCG00014895
TU92296 other downstream 559747 37779333 ~ 37783575 (-) True G73916
TU92209 other downstream 1018015 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 1949829 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 2089135 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 2160971 36101358 ~ 36182351 (-) True G73604
TU92533 other upstream 61869 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 81972 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 140032 38490323 ~ 38490940 (-) False AMCG00014891
TU92596 other upstream 247077 38597368 ~ 38644538 (-) False G74160
TU92703 other upstream 547804 38898095 ~ 38920353 (-) True G74247

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051480 False 738 mRNA 0.49 4 NC_007114.7 29867982 ~ 29869120 (-)
grasscarp (Ctenopharyngodon idella) TU311016 True 1399 lncRNA 0.50 9 CI01000069 2168680 ~ 2173450 (+)