RNA id: TU92512


Basic Information

Item Value
RNA id TU92512
length 1588
lncRNA type read_through
GC content 0.53
exon number 2
gene id G74093
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38309085 ~ 38340216 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaacaatcaagaacgcgagaagcataataaaactgtgaagtgctatctagcagggatagaggactaatattacaagtgctgtcggaagagatgcgtcttgagtaagcgccggaatgaggtcaaggactctgctgttttgacttcggtgggcaggtcgttccaccatttaggggccagggatgagaaggagcggctctggaggaaggagagtggagaggaggcagagttagtcttctggcactggaggaacgtagtggtctggagggaaatgtatggagagacgagtgactgaaggtagcttggtgcagtgtggttgagaccgcggtaggtgagggtcaatgtcttgaactggatgcgtgccggtatcggcaGCCAGTGGAGGGatcggagcagtggagtagcgtatGCGAATCGgcgcagagagaataccagacgagccgcagagttgtggatgagctggagcggcaggtagtagttgcaggcaggccggccaggcgggagttgcagtagtccaggcgggagaggaccagtgactggatgagcagctgagttgagtattcggtgaggaagggacggattcggcgtatgttgctcaggaagaatctgcaggtgcgtgtcagcgtagTGATGTGCTGGGtataggagagcgcaggatcaagcgtgactcctagattttttgcggaagaagaaggagagagtggtggattccaaggggatcgagatggggaggtcagcagaaggtgaggaagagtagggggaaaacaggagatccgatttggtgaggttgagcttgaggtggtgtgagtgcatctagatggagatagcagacaagcaggaagagatacgagaggggatgagagggtcagaggagggaaaagacaggaagatctgggcatcatcagcatagaagtggtaggagaagccatgggatgcgatgagggggcccagggagcgagtgtagagagagaacaggagcgggcccaggacagagccttggggtacacctgtgaggagaggttggggggtggatgaggaacctcaacacgtcacttggtaggtccggtcgttgaggtaggaggagaaccaggtgagagcagttccagagattccaaggtcagcgatgcaggagaggaggatggagtgatcaacagtgtcaaatgctgtggagaagtcaaggaggatgaggattgaggagagggaggccacccaagcacagctgagggagttagtgactgccaggagagccgtctcagtggagtgagctgtgcggtagccggattgcagaggatcaaggagtgagtgttgggacagaaagtcagagagctgacggtggaccacccgctcgagagtctttgagaggaaggggagtagggagacagggcgggtCCAGGTGAGTAAAAAGTCAGTAAGTCAGTAAatttacagacaaaaaaaataaaaaatctaaaatcataatctgtgagcaaaaatgcaATGAGGgacatttgttgtattttttggtgAGAATTTTCTTGGTCCCTTGCTTTAAACAGCTTTATATTCTGCAGCAGACATCCCATTAGCAGACTAGAGCTCACATGCTCTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92461 lncRNA downstream 25568 38281437 ~ 38283517 (-) True G74052
TU92433 lncRNA downstream 128487 38177974 ~ 38180598 (-) True G74030
TU92434 lncRNA downstream 128487 38180047 ~ 38180598 (-) False G74030
TU92368 lncRNA downstream 237468 38063347 ~ 38071617 (-) True G73980
TU92314 lncRNA downstream 464742 37843170 ~ 37844343 (-) False AMCG00014865
TU92501 lncRNA upstream 3106 38343322 ~ 38350291 (-) True G74087
TU92504 lncRNA upstream 3106 38343322 ~ 38350291 (-) False G74087
TU92556 lncRNA upstream 148046 38488262 ~ 38488479 (-) True G74128
TU92567 lncRNA upstream 165976 38506192 ~ 38575968 (-) True G74137
TU92594 lncRNA upstream 299949 38640165 ~ 38644538 (-) False G74160
AMCG00014883 mRNA downstream 45601 38261530 ~ 38263484 (-) True AMCG00014883
AMCG00014879 mRNA downstream 148998 38141907 ~ 38160087 (-) True AMCG00014879
AMCG00014878 mRNA downstream 180340 38126043 ~ 38128745 (-) True AMCG00014878
AMCG00014874 mRNA downstream 256973 38047486 ~ 38052112 (-) True AMCG00014874
AMCG00014875 mRNA downstream 269034 38037363 ~ 38040051 (-) True AMCG00014875
AMCG00014888 mRNA upstream 23686 38363902 ~ 38402794 (-) True AMCG00014888
AMCG00014889 mRNA upstream 75186 38415402 ~ 38423841 (-) True AMCG00014889
AMCG00014891 mRNA upstream 148403 38488619 ~ 38492954 (-) True AMCG00014891
AMCG00014894 mRNA upstream 260205 38600421 ~ 38629200 (-) True AMCG00014894
AMCG00014895 mRNA upstream 336193 38676409 ~ 38688061 (-) True AMCG00014895
TU92296 other downstream 525510 37779333 ~ 37783575 (-) True G73916
TU92209 other downstream 983778 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 1915592 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 2054898 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 2126734 36101358 ~ 36182351 (-) True G73604
TU92499 other upstream 3106 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 71944 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 92047 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 150107 38490323 ~ 38490940 (-) False AMCG00014891
TU92596 other upstream 257152 38597368 ~ 38644538 (-) False G74160

Expression Profile