RNA id: TU92533


Basic Information

Item Value
RNA id TU92533
length 979
RNA type TUCP
GC content 0.42
exon number 2
gene id G74107
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38412160 ~ 38413231 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNatactataaattcacttcttaaattgaaatttataagtgtaccttacgctacatgaCTATGTGACTAAATGTGTTCTTACTGTAATTTTCCCTGCAGAATAGAGACTACACCAAATAGGGGAGGCAGAGGCAAAATTCTGACTGACCAATGAGCTGTGGTCAATTTGTTTCAGGCCAGAAATGATTTTCACCTTCAGGCAGCACATCTTGAACAATGACGACATGTTCATGAACGTGGAAGCCATGAGTTTGCCGACTGCTGCACGCATGCTGAAAAGGCACCAGGTGTCTCTAAAACAGCTATACCTTGTGccttttgaaagaaatgcagacagAGTGAAGCAACTGAGGACTGAAGGGTGTTGGAGCTGGATGCTGACGATCTTAAATTCATCTTTCTGGATGAGGCAGGCTTCAACCTGGCCAAGACAAGGAGGAGAGGTCGGAATTTAATTGACCAGCGGGCAACCATTCAAGTACCTGGACAATGTGGGGCCAACATCACCATGTGTGTGGCTATGTCGGACGATGGTGTGGTGGTACGCAGACCTCGTATTGGATCATATAATGCAGCTCTCCTTGTAACCTTCCCTGATGAGCTAAATCAGGTCTGTAGAGCTAATGTCGTGACCTATgtcagaggttcccaaactggggtccgcGAGGGGGTGGTAGGGTGTCCGCGGCAAAAtccccccctcaaaaaaaaaaaaataatgttttttattaaaaatgcagtctGGCACTATGTTGTGATTTTATTGTAGTTCATCAATACATTCCAGAGTTTGTTCAATGATTCCActatgtctgttttattctctttACTAGTCCTTTTACAGTGATGTATTTACATGTAGTACCATAATGAAACGTATCACATTTTGTactacaatatttaatgattgtACGAACAACTACAAAGTGAAACTATCGGTATCTTGTGTGTGGGTGATCTAAATTAATGTTCCTATGGT

Function

GO:

id name namespace
GO:0070279 vitamin B6 binding molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92501 lncRNA downstream 61869 38343322 ~ 38350291 (-) True G74087
TU92504 lncRNA downstream 61869 38343322 ~ 38350291 (-) False G74087
TU92512 lncRNA downstream 71944 38309085 ~ 38340216 (-) True G74093
TU92461 lncRNA downstream 128643 38281437 ~ 38283517 (-) True G74052
TU92433 lncRNA downstream 231562 38177974 ~ 38180598 (-) True G74030
TU92556 lncRNA upstream 75031 38488262 ~ 38488479 (-) True G74128
TU92567 lncRNA upstream 92961 38506192 ~ 38575968 (-) True G74137
TU92594 lncRNA upstream 226934 38640165 ~ 38644538 (-) False G74160
TU92593 lncRNA upstream 227445 38640676 ~ 38644538 (-) True G74160
TU92608 lncRNA upstream 235691 38648922 ~ 38649290 (-) True G74167
AMCG00014888 mRNA downstream 9366 38363902 ~ 38402794 (-) True AMCG00014888
AMCG00014886 mRNA downstream 72797 38330131 ~ 38339363 (-) True AMCG00014886
AMCG00014885 mRNA downstream 95143 38303052 ~ 38317017 (-) True AMCG00014885
AMCG00014883 mRNA downstream 148676 38261530 ~ 38263484 (-) True AMCG00014883
AMCG00014879 mRNA downstream 252073 38141907 ~ 38160087 (-) True AMCG00014879
AMCG00014889 mRNA upstream 2171 38415402 ~ 38423841 (-) True AMCG00014889
AMCG00014891 mRNA upstream 75388 38488619 ~ 38492954 (-) True AMCG00014891
AMCG00014894 mRNA upstream 187190 38600421 ~ 38629200 (-) True AMCG00014894
AMCG00014895 mRNA upstream 263178 38676409 ~ 38688061 (-) True AMCG00014895
AMCG00014897 mRNA upstream 315758 38728989 ~ 38836352 (-) True AMCG00014897
TU92499 other downstream 61869 38343322 ~ 38350291 (-) False G74087
TU92296 other downstream 628585 37779333 ~ 37783575 (-) True G73916
TU92209 other downstream 1086853 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 2018667 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 2157973 36253774 ~ 36254187 (-) True G73612
TU92542 other upstream 19032 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 77092 38490323 ~ 38490940 (-) False AMCG00014891
TU92596 other upstream 184137 38597368 ~ 38644538 (-) False G74160
TU92703 other upstream 484864 38898095 ~ 38920353 (-) True G74247
TU92854 other upstream 844831 39258062 ~ 39260360 (-) True G74375

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000161_01695831_01704007.mRNA True 1494 mRNA 0.40 4 CI01000161 1695370 ~ 1704449 (+)