RNA id: TU92556


Basic Information

Item Value
RNA id TU92556
length 218
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G74128
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38488262 ~ 38488479 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgggagggagggtACAGTGAAGGGCAGGATTGGGGTAGGGAGAGCGTGTGAAGAGAGTGTTGGGCAGGAATGGGCCATAGAGGGGTAAGGGGAGTGTCATTATTTACCCATTCCAGACAGACCTGTTCCTTCCTGGTATCCCAGAGAGCATTGCAACCACAGCCACCCAATAATGACTCTCTCAATGGGCTCAAACTACAGTCTGGTTTTAGTGAGG

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92501 lncRNA downstream 137971 38343322 ~ 38350291 (-) True G74087
TU92504 lncRNA downstream 137971 38343322 ~ 38350291 (-) False G74087
TU92512 lncRNA downstream 148046 38309085 ~ 38340216 (-) True G74093
TU92461 lncRNA downstream 204745 38281437 ~ 38283517 (-) True G74052
TU92433 lncRNA downstream 307664 38177974 ~ 38180598 (-) True G74030
TU92567 lncRNA upstream 17713 38506192 ~ 38575968 (-) True G74137
TU92594 lncRNA upstream 151686 38640165 ~ 38644538 (-) False G74160
TU92593 lncRNA upstream 152197 38640676 ~ 38644538 (-) True G74160
TU92608 lncRNA upstream 160443 38648922 ~ 38649290 (-) True G74167
TU92615 lncRNA upstream 173659 38662138 ~ 38662455 (-) True G74174
AMCG00014889 mRNA downstream 64421 38415402 ~ 38423841 (-) True AMCG00014889
AMCG00014888 mRNA downstream 85468 38363902 ~ 38402794 (-) True AMCG00014888
AMCG00014886 mRNA downstream 148899 38330131 ~ 38339363 (-) True AMCG00014886
AMCG00014885 mRNA downstream 171245 38303052 ~ 38317017 (-) True AMCG00014885
AMCG00014883 mRNA downstream 224778 38261530 ~ 38263484 (-) True AMCG00014883
AMCG00014891 mRNA upstream 140 38488619 ~ 38492954 (-) True AMCG00014891
AMCG00014894 mRNA upstream 111942 38600421 ~ 38629200 (-) True AMCG00014894
AMCG00014895 mRNA upstream 187930 38676409 ~ 38688061 (-) True AMCG00014895
AMCG00014897 mRNA upstream 240510 38728989 ~ 38836352 (-) True AMCG00014897
AMCG00014902 mRNA upstream 650344 39138823 ~ 39176661 (-) True AMCG00014902
TU92542 other downstream 55387 38432263 ~ 38432875 (-) True G74115
TU92533 other downstream 75031 38412160 ~ 38413231 (-) True G74107
TU92499 other downstream 137971 38343322 ~ 38350291 (-) False G74087
TU92296 other downstream 704687 37779333 ~ 37783575 (-) True G73916
TU92209 other downstream 1162955 37325020 ~ 37325307 (-) True G73833
TU92559 other upstream 1844 38490323 ~ 38490940 (-) False AMCG00014891
TU92596 other upstream 108889 38597368 ~ 38644538 (-) False G74160
TU92703 other upstream 409616 38898095 ~ 38920353 (-) True G74247
TU92854 other upstream 769583 39258062 ~ 39260360 (-) True G74375
TU92969 other upstream 1149420 39637899 ~ 39638957 (-) True G74477

Expression Profile