RNA id: TU92594


Basic Information

Item Value
RNA id TU92594
length 3035
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G74160
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38597368 ~ 38644538 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCCTGTAGGACCCTCACCTTGAACTCCTTCCCCGGCTGGAAGGGGAAGTTGGTCTCACGCTGTTCCTGACCCCAGCTCCACTTCTGCCTTGAGTTGAGCACAATGTGACTCCCTGAGAATCGAGGGTTGAAGTGCAGTGCCAAGTCTTCATCAGAGTGCCCAATCTCAATGGCAAAACCTGAAGGCACCTAGAGGGATATACCCTCTGATTGTCATGGTTTCTCCTTTCCTGAATGTCTGCCTTTGCTCAACATtctgcacacaaaaataaataaaactaaaatgtattattcagcaTCTCGGCTAACTTCACTGATCTGAATCTTGGTTCAGTTAGTGGAGACAgggatattaatttaatatgcaaaaatgtgcttttctatAGAAAACTGAAGACTCTGTGGACCTCTGGGACCGAgggcctgattaaatcaaaactttgacccacccactaatagaaaactatacAGAATTGtgctcagttgcggcttcatttttagtaagatgacactttcttctaatcagaaatgtaaccgctatgatgtacaggtttgtagtttgccgACTTTGTGAACACTGCTGTAGCTCAGAggtcagtacagtacagcagggatctccgtcaaaaaaaaaaaaacaaaaaaaaaaacatcgttagcacataatatttatttcttggcagacgccgtTAACCAGtgcgacttacaaaacaaactTATGAATTAACAGAAGATTATTTCTTGTGGGATATTTTTCTACACATGCTGCACGAAGCACTTTCAATGTAATCAATCGCTTTACATTTGCAAGTGAAATTTGGTTGTGAATGCACTGAAGGATGTTTGACCTAGCCATTTCACATTACACTGTTTTACCAACTAAGGAATTGATGCAAAGTACTGCAAAAATCTATGATTCAGTAAAGTTTGATTATGTTAAAACATTtctcacacacatttcaattacCGCTTTCCATGTGATAGGCATGTCAAATGCGTagtgtttgttaatgttttatatttttctatgtaaTAAACTGATATTTGGACACGAACGTTTTCTACGCGCGCTGACAAAACAGCACTCACATCGCCTGCGCAGCGGCGGGACAGagccagcagcagcacagccgTCACAACCCGAGGTGCAGTGAGTGAGGCGCGGCCTCCCAGGCCGAggcgccgccgccgccgctgtCCATCTGTCCGCAGCCCCGGAGTCAACACATCAGTCCCGCTCCTCATATCAGCTGGGCAGggcttttaaacttttaaataataaaaccaaacgAACAAATAATACTACTGATAATCACGGTTTACATAGAAGTCCTGTTTATGTGTAAGTTATTAAAGTGTTTCCGAATTAATGAGATCGATATGTAAGCCTTATGTTGGATATATACTCTTTGCACAATACAACAATGCTCTATCGACTCTCTCTAATGGCATCCGACTGCGTGTAACGTCAGCGGCGCACAGTACCAGCGCGCACTCATCACACCCGACTCTGGACAGGCGATTCCTCAGTCATGTGACTCCGTTCGAGACAGGCGTTTATTCTTAGTGTGGTGTcgtgtgttttttcattggtAAACGGCGCTATATCATATGCAGTGGTATATAGAGGCACAGGTGATGAAGCCATTCAAGTTTAAGTTACTTattgtgagggagagagagcgccAAGACAACCCCTGTTGTTTGTCACATGATAAACCCAAACCCACCTCTTTGACGCAGTGTGCGGGGATGAGTTTtagctgtgtatgtgtgtgtattttcgATGTGTGTTTATACCCTGTGTGGGTGCGAATGCGcacaattgtgtgtttttatatgcatttaggaaacttaaaaaagcaatacaaacaaatcaataaaaaaagaccCAGGAACGGTTACACAAGAGAACTTTTAATAGTAAATAGAACAGTTGAGAAATGGGACTGCAAAGCAAACAATACTGATTCCTTTAGTTTTCCCTGTGGATATGAATAGCTGATGGGGATTTCTAGGTATTGCAAGGTGNNNNNNNNNNgggggggggggggggggggggggggggggggggcagactCTGCATTGAAGCAAAGCAAAAGAACAGACCAACCAATTAAAAAGCTATACTAGTGTTCAGCTGCAGATTTCAGTGGTGATGAGATATCTGTGTGACCCCATCAAATAACAGCAGTGTGAAGAGGTTAGCATTTTTGTCCACTGCAGGTAAGTTGAAGATTACAGAGCTATTGgtaagtgtgtgagagagcatgCTTGTGTGAGTAccagtgtgtgtacatattCTATGGTCGTGTGTGGTCCTGGGTGCATGTGGACACACAAAGAACATAAAGACTAATTTAAACAGTACTCAAGGTTCTAAGGATTTTAAGCAGCACTCTAGCACCAGACCCCAGTGACTTGTGTACCAAGTGTAAGTATGTGCACTCTTCCTGTGTAAAACAGTCTAACGTTCAGGACAGTGTTTTCACTGCAATCTGGAGATAGATATTACTATGCTTTTATATAGGCGAAGGTCTGTGACTGATAGATATTAGAGTCAGTCTGCAAATGTTGTGCTTccaaaggaagagaaaaatacCCAACCTCTGTACTCAGTGCTGAACCCTGGCAGACCCCTTATTTGATATGGATGGACACAAGCTGGACTTCGCCTTCCAGCTGCATGTACAGGAACTGGTCGTCTCCCAGGCGATTGGGGAAGTGGATCACAGAGCCGTCAGAGAGCTTCACCTCGAATGAGTCGTTGTTGTGGGTGATGTAGACCTGAACTCCTCCCCCTGCTGGAAGGGAAATGAAGACTCTCTCTGCTCGCTGCCCCAGGCCCCGCCCTGCCGAGAGTTCATTACGATGGTGCGCAAGTCACCGTGGGCGTCGAAGCGGGGGTTAAAGTGCAGAGCCACATCATTCTCTGAGTGACCCAAGTTGATGGCAAACCACTGCAGCCTGATTTGGGTTTCCCCTTCACCTTCAGGGTCTGCCCTGCTCTGAAGGCCAGGTTTTGCACCTTAACATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92567 lncRNA downstream 64197 38506192 ~ 38575968 (-) True G74137
TU92556 lncRNA downstream 151686 38488262 ~ 38488479 (-) True G74128
TU92501 lncRNA downstream 289874 38343322 ~ 38350291 (-) True G74087
TU92504 lncRNA downstream 289874 38343322 ~ 38350291 (-) False G74087
TU92512 lncRNA downstream 299949 38309085 ~ 38340216 (-) True G74093
TU92608 lncRNA upstream 4384 38648922 ~ 38649290 (-) True G74167
TU92615 lncRNA upstream 17600 38662138 ~ 38662455 (-) True G74174
TU92657 lncRNA upstream 78066 38722604 ~ 38750977 (-) False G74206
TU92655 lncRNA upstream 88180 38732718 ~ 38750977 (-) True G74206
TU92672 lncRNA upstream 131166 38775704 ~ 38776755 (-) True G74221
AMCG00014894 mRNA downstream 10965 38600421 ~ 38629200 (-) True AMCG00014894
AMCG00014891 mRNA downstream 147211 38488619 ~ 38492954 (-) True AMCG00014891
AMCG00014889 mRNA downstream 216324 38415402 ~ 38423841 (-) True AMCG00014889
AMCG00014888 mRNA downstream 237371 38363902 ~ 38402794 (-) True AMCG00014888
AMCG00014886 mRNA downstream 300802 38330131 ~ 38339363 (-) True AMCG00014886
AMCG00014895 mRNA upstream 31871 38676409 ~ 38688061 (-) True AMCG00014895
AMCG00014897 mRNA upstream 84451 38728989 ~ 38836352 (-) True AMCG00014897
AMCG00014902 mRNA upstream 494285 39138823 ~ 39176661 (-) True AMCG00014902
AMCG00014901 mRNA upstream 560509 39205047 ~ 39217098 (-) True AMCG00014901
AMCG00014903 mRNA upstream 618603 39263141 ~ 39270244 (-) True AMCG00014903
TU92559 other downstream 149225 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 207290 38432263 ~ 38432875 (-) True G74115
TU92533 other downstream 226934 38412160 ~ 38413231 (-) True G74107
TU92499 other downstream 289874 38343322 ~ 38350291 (-) False G74087
TU92296 other downstream 856590 37779333 ~ 37783575 (-) True G73916
TU92703 other upstream 253557 38898095 ~ 38920353 (-) True G74247
TU92854 other upstream 613524 39258062 ~ 39260360 (-) True G74375
TU92969 other upstream 993361 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 1256932 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 1290355 39934893 ~ 40012081 (-) True G74593

Expression Profile