RNA id: TU92634



Basic Information


Item Value
RNA id TU92634
length 369
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G74192
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38711708 ~ 38712076 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caagTACTTGACCCCTTccacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcaaggctgacgtttggcaactcgaaccttcagctccctccacagattttctatgggattatggtctggagactggctaggccactccaggaccttaatgtgcttctttttgagccactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggctgagggaaggaggttctcaccccagatttgacggtacatggccccg

Function


GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92592 lncRNA upstream 56310 38651397 ~ 38655398 (+) True G74159
TU92590 lncRNA upstream 62459 38648922 ~ 38649249 (+) True G74157
TU92477 lncRNA upstream 398091 38311476 ~ 38313617 (+) True G74067
TU92327 lncRNA upstream 778913 37932522 ~ 37932795 (+) True G73944
TU92322 lncRNA upstream 827020 37876261 ~ 37884688 (+) True G73939
TU92637 lncRNA downstream 1589 38713665 ~ 38714115 (+) True G74195
TU92644 lncRNA downstream 20642 38732718 ~ 38751366 (+) True G74202
TU92670 lncRNA downstream 52747 38764823 ~ 38765047 (+) True G74219
TU92673 lncRNA downstream 75885 38787961 ~ 38788273 (+) True G74222
TU92676 lncRNA downstream 95594 38807670 ~ 38807922 (+) True G74225
AMCG00014893 mRNA upstream 64766 38643054 ~ 38646942 (+) True AMCG00014893
AMCG00014892 mRNA upstream 69191 38629121 ~ 38642517 (+) True AMCG00014892
AMCG00014890 mRNA upstream 138803 38553972 ~ 38572905 (+) True AMCG00014890
AMCG00014887 mRNA upstream 245481 38458369 ~ 38466227 (+) True AMCG00014887
AMCG00014884 mRNA upstream 352577 38351247 ~ 38359131 (+) True AMCG00014884
AMCG00014896 mRNA downstream 71319 38783395 ~ 38784172 (+) True AMCG00014896
AMCG00014898 mRNA downstream 249877 38961953 ~ 38968022 (+) True AMCG00014898
AMCG00014899 mRNA downstream 515851 39227927 ~ 39233005 (+) True AMCG00014899
AMCG00014900 mRNA downstream 525548 39237624 ~ 39260277 (+) True AMCG00014900
AMCG00014904 mRNA downstream 669025 39381101 ~ 39389687 (+) True AMCG00014904
TU92541 other upstream 278847 38432374 ~ 38432861 (+) True G74114
TU92227 other upstream 1193302 37518108 ~ 37518406 (+) True G73850
TU91690 other upstream 3317059 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 3751261 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 3931118 34780122 ~ 34780590 (+) True G73329
TU92678 other downstream 98617 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 624192 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 894811 39606887 ~ 39621186 (+) True AMCG00014913
TU93044 other downstream 1153006 39865082 ~ 39872003 (+) False AMCG00014923
TU93045 other downstream 1153544 39865620 ~ 39872003 (+) False AMCG00014923

Expression Profile