RNA id: TU92672


Basic Information

Item Value
RNA id TU92672
length 1052
lncRNA type intronic
GC content 0.46
exon number 1
gene id G74221
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38775704 ~ 38776755 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACGACCTGCATTGGAAAACAATAGTTTTAGCTGATTGTTCTCCAACTTTAAGATCCCTGTTAAGTGTTGATGAAGTGGAGAGAGCGACTGCGTGGACTGAGATCTTAGAGTTAATAAGTGAAGCTTGTGGCTGGAATGCAGCAGATTGGGgaagtacattttattctgcaacacagagaaaaggcGAACATGTAAGGGCATATGCTCTGAGAAAACGAGCTCTCTATTTGATTCTGGATACAATCgatgatgatatatatgatGAACAGTTTAAGAAATCCTTTTTACATGGATTACACCCTGATTTGAAAGCAATCCTGGGCATCTCAGCTGATGCAACCAAGGATTGGGAGAATTTGTTTCCTAAAATTTGCAGAGCACAGGAATTAGTGAAACAAGGAGCTTGGAAATCTGTTAAAATTGATAATAAggggaaaactgaaaaagaatccCGTGAAAAACTATTCCAGGTCGAGGGGCCTCATGGTTTCTTAAACACTGAGCCTGAATATGGGCCTTGTCCCCTTCATAATCCTCActgggaaaagaaacacaagtCTGGTTACAAGCGTAACAGGGGCAGAAGTGACTGCGCTGGAGATCAGACTCACACTGACCCCAAATTAAACAGACAGGTCGGGATACCCCGAGGGTCAGTGCCTAACATGACTCCTTCTGCCTATGATGAGTCAAAGGCAGCACCGGCTCCTCCTCAGCACTCAACTCCTCCCCTGTATCCGCAGAAAGAGCTACAGCTCCTGCGTCAGGAAGTGCAACAACTGCGCACTGATCTCATAGGGAAAGCAGCCCATGCACAGCAAGCATAGGGGTGCGTGGCCTCCCTGAAGGTAGAAACGAAGCTCTACCGGGACAGATGGAACAGGCCGATCTTAAGAGCAGCTGTTGATGGAGGCCCACAGCAATGCATGCTCTTAGACACTGGTGCTTCTGTATCTGTcctacatgcacacacacacacacacacacacacacacacacattatctaCAGGTATTATAGCTAATGTATCTGGGTTTAAGGGAGACATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92657 lncRNA downstream 24727 38722604 ~ 38750977 (-) False G74206
TU92655 lncRNA downstream 24727 38732718 ~ 38750977 (-) True G74206
TU92615 lncRNA downstream 113249 38662138 ~ 38662455 (-) True G74174
TU92608 lncRNA downstream 126414 38648922 ~ 38649290 (-) True G74167
TU92594 lncRNA downstream 131166 38640165 ~ 38644538 (-) False G74160
TU92674 lncRNA upstream 11206 38787961 ~ 38788273 (-) True G74223
TU92675 lncRNA upstream 26161 38802916 ~ 38803885 (-) True G74224
TU92683 lncRNA upstream 60140 38836895 ~ 38837139 (-) True G74232
TU92693 lncRNA upstream 90806 38867561 ~ 38867926 (-) True G74239
TU92735 lncRNA upstream 225867 39002622 ~ 39042048 (-) True G74277
AMCG00014895 mRNA downstream 87643 38676409 ~ 38688061 (-) True AMCG00014895
AMCG00014894 mRNA downstream 146504 38600421 ~ 38629200 (-) True AMCG00014894
AMCG00014891 mRNA downstream 282750 38488619 ~ 38492954 (-) True AMCG00014891
AMCG00014889 mRNA downstream 351863 38415402 ~ 38423841 (-) True AMCG00014889
AMCG00014888 mRNA downstream 372910 38363902 ~ 38402794 (-) True AMCG00014888
AMCG00014902 mRNA upstream 362068 39138823 ~ 39176661 (-) True AMCG00014902
AMCG00014901 mRNA upstream 428292 39205047 ~ 39217098 (-) True AMCG00014901
AMCG00014903 mRNA upstream 486386 39263141 ~ 39270244 (-) True AMCG00014903
AMCG00014905 mRNA upstream 505399 39282154 ~ 39285347 (-) True AMCG00014905
AMCG00014906 mRNA upstream 601689 39378444 ~ 39379116 (-) False AMCG00014906
TU92596 other downstream 131166 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 284764 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 342829 38432263 ~ 38432875 (-) True G74115
TU92533 other downstream 362473 38412160 ~ 38413231 (-) True G74107
TU92499 other downstream 425413 38343322 ~ 38350291 (-) False G74087
TU92703 other upstream 121340 38898095 ~ 38920353 (-) True G74247
TU92854 other upstream 481307 39258062 ~ 39260360 (-) True G74375
TU92969 other upstream 861144 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 1124715 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 1158138 39934893 ~ 40012081 (-) True G74593

Expression Profile