RNA id: TU92799



Basic Information


Item Value
RNA id TU92799
length 421
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G74333
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39285294 ~ 39285804 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCCAGTCTTGTGCGTTTCTTGTGCTGGTCAGCAGACTCCTGGCTGGCTTgcatcgctctctctctttcgctctctgTTATTCTGTCTGTATTACTCCCCAGCCTCCATCCCTGACTGTCACACTACCCGACTgcctgcttctctctCTATACAGAGAGGCTTAATCCAGCAGCTTCCatgcctccctctccctgtgcCCGCTtggtctccctccctccctccctccgctGTAATAAGCCTgctctgtgcctctctctcgcctctctgtgtgaaccTGCGTCTTTGCTCCTGTCTGTGTTAAACcttgtctctctttttctctctctctccgtctcatTCGTTTTGTCTGTATGTCCCCATGTATAGGTGTGGCTCCATGAGAACACcgatctgtctctctctctctgcatgtgTTGTTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92796 lncRNA upstream 5326 39279236 ~ 39279968 (+) True G74330
TU92795 lncRNA upstream 8456 39276240 ~ 39276838 (+) True G74329
TU92770 lncRNA upstream 102660 39182279 ~ 39182634 (+) True G74306
TU92701 lncRNA upstream 343535 38919805 ~ 38941759 (+) True G74246
TU92687 lncRNA upstream 419586 38863413 ~ 38865708 (+) True G74234
TU92804 lncRNA downstream 19776 39305580 ~ 39305974 (+) True G74338
TU92830 lncRNA downstream 191012 39476816 ~ 39481707 (+) True G74363
TU92905 lncRNA downstream 212899 39498703 ~ 39499660 (+) True G74422
TU92928 lncRNA downstream 299118 39584922 ~ 39585159 (+) True G74442
TU92921 lncRNA downstream 301609 39587413 ~ 39588507 (+) True AMCG00014909
AMCG00014900 mRNA upstream 25017 39237624 ~ 39260277 (+) True AMCG00014900
AMCG00014899 mRNA upstream 52289 39227927 ~ 39233005 (+) True AMCG00014899
AMCG00014898 mRNA upstream 317272 38961953 ~ 38968022 (+) True AMCG00014898
AMCG00014896 mRNA upstream 501122 38783395 ~ 38784172 (+) True AMCG00014896
AMCG00014893 mRNA upstream 638352 38643054 ~ 38646942 (+) True AMCG00014893
AMCG00014904 mRNA downstream 95297 39381101 ~ 39389687 (+) True AMCG00014904
AMCG00014908 mRNA downstream 225968 39511772 ~ 39529811 (+) True AMCG00014908
AMCG00014907 mRNA downstream 279929 39565733 ~ 39575588 (+) True AMCG00014907
AMCG00014909 mRNA downstream 298234 39584038 ~ 39588279 (+) False AMCG00014909
AMCG00014913 mRNA downstream 333004 39618808 ~ 39621018 (+) False AMCG00014913
TU92678 other upstream 474166 38810693 ~ 38811128 (+) True G74227
TU92541 other upstream 852433 38432374 ~ 38432861 (+) True G74114
TU92227 other upstream 1766888 37518108 ~ 37518406 (+) True G73850
TU91690 other upstream 3890645 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 4324847 34942011 ~ 34960447 (+) True G73343
TU92814 other downstream 50464 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 321083 39606887 ~ 39621186 (+) True AMCG00014913
TU93044 other downstream 579278 39865082 ~ 39872003 (+) False AMCG00014923
TU93045 other downstream 579816 39865620 ~ 39872003 (+) False AMCG00014923
TU93040 other downstream 587336 39873140 ~ 39875428 (+) True AMCG00014923

Expression Profile