RNA id: TU92845


Basic Information

Item Value
RNA id TU92845
length 3665
lncRNA type inter_gene
GC content 0.53
exon number 5
gene id G74367
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39293951 ~ 39299385 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAACCTGAAATGTCAGATAATTACTGTTGATGTTAGCTAgtttttgttcttgtgtgtgtgtttttttctttttcaggttagattatcacacacacactgacatatatttaatgttgagagaatgttaaattgtccccAGGGTTCGCATTACGGGGGGGATTGGGGGGTTTAACCCCCCTAATAAAGACTTGGGCACCCCCGAAACAGAGGTAAAAACAataggtgggggtgggggtcaaaacatttatataacgTAAGCACTAGCATGATGGAAACACGACCTACACCCGCACCCCCCACTACCACCGTGGACAAAACACCGTCTGCAACACCCCCCGCGCACCTCGTGGCACCGCAGACAACATTGCTGAGCCCCCCAATTGCCATTGTATATTTTGCACTGTGATTGTCCCCCCAAACAATGGTTGGCTGGCTCATGATTGTATTACAGTGgaaaagtattcaccctccttggacttttccacatttaattgtgttacaacataaaATCAGCATGTAGAACCTAGGGCTGCCATCAGGCTTTGTCAGCAGTTTTTCCCAGATTAACTCCACATGAGATTAATGAAGAGCCACTAAATGAATCCCATCTACAACAGCATGTGTCAGACACTATAAATAATGGATCAGGTAGTGCTGTATTAAATCACTAATTTTTCAAGGTAGTTTCTTATTTCTGCAGTGGGTTGAAGACTTAAATTAAGATGCCAGTTATTTCTCAAATCAGTTGAAAAGGCAAATGGCAATCACGGTGGGCACAAACCACATGGCTTGGGTTTATGCCATTATCCAGAAAACTTAAATAGAATGAACATATTACATAATTAGAATTAAccaatttaaagtgtttaatttctgcatatttatacaaaaaagtTTAAGTTTTAAAGTGACTAAATCTTTTCCAGTTCAATTGCTCTCAAGACAAATAATGGAACATTCCTTCAAATATTCAGGTTATCCTGTCCATGACATAACCCTGGGTTTAACGGCTGGACAACAGTGCTAGTGTTGAATAAAGTGTAATAAAAGTGAACTGGTTTAGAGAGGCCATGACATCAGTGGCCAGGCTCGTTACATCAGGCATCGGTCACCAGTCCCCCACCCTCCAACAAAACAGCAGCCAGACTTGTGCTTTTGTAACAAACAGctggtttatttttcactgcTCAGAGTTCCTGCTGCTTCCCTCAGGACCAGTCAGCCGTGGCGCCGCCCCAGTCAGAGGCCTGGGCCGTGGGCGCGGCAGACCAATCCTCGGTGGCGGGCTGGGCGCTCCAGTCCTATGTTCCACTTTCTCCCCATCTCGCTCACCTGCGAACGCTTCAGTGGTTCCAGGTTCGCGTTTGACAGGAGGACCTGGACAGAAACGGGGATGAGAAGGAATGACTTAACAGACGGGCAGCGCTGAAAGCAGCTTCTGCCCTGGTCAGGGTCCTGTACCTACGCAGCCCAACTGCGCAGTTGTGTGCGGCAGGGCTCACTGTGCTCTCCATCGTGCGGTTGCGTACTCTGCACTGGTGTTGGTCTATCGGTCAGGGCTGGTGTGGATGGGATCAGCACTGATCTGAGTTACTGGGGTCAGTAGGACTGCTCTGTGGGGTATCAGGGCAGTCAGCAGCAGTGCTGGGGTGCGTACCTGCGGGGAACTGCTGAATTGGCACAGAGGGCACCTGGACGCCCTCAGACCAGTCGGCCACCTCAGGCTGCGTGAAGTCGGCCACCGGTGCGGTCCACTCGCCCTGGAACTCCTCCTTCCCCACGGCCTTCTCTGCCGCGGCCTGCTCCTCCTTCTCAATCTGCAGGGACAGACAGGGTcagcgtgtgtgcgtgcgtgtgtgggtgggtgagggtcagcgtgtgtgcgtgtgggtgaAGGTCAGCGAAACTCACCTCCTCTGGGTCCCTgtagaagtacagatcaggcaTGACCTCCCAGGGGTGCTCCCGAGAGATGGTCCCCCTCATGCGCAGCACCTCACGGGCCAGCATCCACCACATGAGCCCCACAGAGTGAGGGCCCTGTTGTTGCAGGGGATGGCGATGTCCACGTATCTCAGAGGCGAGTCAGTGTTGCACAGCGCGATGGTGGGGATGTTGACGTACGAGGCCTCAGTCAACGGCTGGTGGTCGGCCCGCGGGTCGGTGACGATCAGGAGGCGGGGCTCCCGGAAGGCAGCCTGGATCTGATTGGTGAAGGTGCCGGGTGTGAATCGGCCGGCAAAGGTGGTGGCACCGGTGGCCGGTGTTCCTGGAGGAGATGACGCACACATCAGCAGGGTTCTCGATGGCCACGATGGCACGTGCAGCCAGCAGCAGCTTCTCCCAGGTCTTCTTCAGGTTGACGATGTAACACCATCACTCTTCCTCTTGTAGACGTACTGCTCCATCTGGAAGTCCAGGTTAGTCCCGCCCAGGTGGGTCCCGGCGGCCAGGAACTTCAACACATCCTCCTCCTTCATCTGCAGCACGTCCAGACCTCCGGACATCGTGAGAGCTTCCCTGGACAAGTTACGACGGGAAagctggagggagggagggagaatgaGTACACCTGAAGGAGATGCTGCTGTCCTCCATGACCCCAGGCGGTGTCTGTGGCTCGGGTCACTATCAAACCCCCGTCATCGGGCCGAGCCCTCATGGCGTTAGCGAAAACCCGGCACTTCACTCTCGCACACTTCCGACACCCGCAGACCGACCTCGGCCCCGGGCTTTAACAGTGTGCCCTAACTGCACAGCAGCGCAGCCGCCAGCTACAGCTCTCTTGGCGGACTCCTTATGCATGGAGATTTACCGAATATAAGGGATAgtacaattacagatcaaaataCAGTTACAGGTTGTCAATGACATGTGAATAGTTAAACAGGCAATATAAATGTGCTACATGCTAGATTGCAATAGCGCACGTCCTATACCCAGCTTATGCAGCCGGGCCTGGGCTGAGCTCTGATCCGGCATCCAGCATCCTGACCAGCTCTCAATGCATTTAAACGAGCCTGCAAATCCACATCAGCGCACCGGCAGCAATACAGCACTTTCACTCACGATCTGTTACTGTAAAGTATAGGGTAACAATTTATTGTCGAATCGGTCGATATTGCGTCTATTTTAGGTTTTTCAGCTTGATTTGACGGCCTAAGACGGGACGATGTCAGATGCATCCATTTCTGCCGGGGCCGCGTGGGGTGACGGGCTCCCTGCGTGACCGGACACGTTTCCAGGAAGCCGGCAACCGCAGTTCAGCGCACAAGCTCCCGCACACACTACGTGAACGCACATCCACACTGCCCGGAGAGACGGCACTTTGCCGCCGCCATGGCCTGCCACGCCAGCCCCAGGCTTTAGGCCTCACACGCGTCCCTCCCGTAAAACAGCATCTAAATCCGTAATATCGCCGCCTCGGCGACCTAAGACGCCATCGTGCGGCTCCAGCGAGCCCCAGCGGCGGGCGGCCGAGCCCGGGTCGGCGCGGTGGGTCAATTTCACACAAATACGGGACTCACCACGAGACAACGCCGTATGGAGATCCTCAGCACACGGAAATAAAGAGGCCGAGCGGAGGAAGTGACGCCTATTTATCGGCCTGCTTCCACCAATCAGCGCTCACTTCCTGTCCGCCAGGCGCAGGGATTCGGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92855 lncRNA downstream 33591 39258530 ~ 39260360 (-) False G74375
TU92846 lncRNA downstream 55187 39232304 ~ 39238764 (-) True G74368
TU92771 lncRNA downstream 111317 39182366 ~ 39182634 (-) True G74307
TU92735 lncRNA downstream 251903 39002622 ~ 39042048 (-) True G74277
TU92693 lncRNA downstream 426025 38867561 ~ 38867926 (-) True G74239
TU92864 lncRNA upstream 2539 39301924 ~ 39302208 (-) True G74384
TU92865 lncRNA upstream 3636 39303021 ~ 39303224 (-) True G74385
TU92866 lncRNA upstream 6323 39305708 ~ 39305970 (-) True G74386
TU92867 lncRNA upstream 15181 39314566 ~ 39315128 (-) True G74387
TU92875 lncRNA upstream 38945 39338330 ~ 39401229 (-) True G74395
AMCG00014905 mRNA downstream 8604 39282154 ~ 39285347 (-) True AMCG00014905
AMCG00014903 mRNA downstream 23707 39263141 ~ 39270244 (-) True AMCG00014903
AMCG00014901 mRNA downstream 76853 39205047 ~ 39217098 (-) True AMCG00014901
AMCG00014902 mRNA downstream 117290 39138823 ~ 39176661 (-) True AMCG00014902
AMCG00014897 mRNA downstream 457599 38728989 ~ 38836352 (-) True AMCG00014897
AMCG00014906 mRNA upstream 79059 39378444 ~ 39379116 (-) False AMCG00014906
AMCG00014910 mRNA upstream 231941 39531326 ~ 39536843 (-) True AMCG00014910
AMCG00014914 mRNA upstream 291173 39590558 ~ 39591658 (-) True AMCG00014914
AMCG00014915 mRNA upstream 293229 39592614 ~ 39599496 (-) True AMCG00014915
AMCG00014917 mRNA upstream 341026 39640411 ~ 39641256 (-) True AMCG00014917
TU92854 other downstream 33591 39258062 ~ 39260360 (-) True G74375
TU92703 other downstream 373598 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 649413 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 803011 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 861076 38432263 ~ 38432875 (-) True G74115
TU92969 other upstream 338514 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 602085 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 635508 39934893 ~ 40012081 (-) True G74593
TU93146 other upstream 645345 39944730 ~ 39951070 (-) True G74591
TU93152 other upstream 685309 39984694 ~ 40012081 (-) False G74593

Expression Profile