RNA id: TU92846


Basic Information

Item Value
RNA id TU92846
length 3154
lncRNA type inter_gene
GC content 0.59
exon number 4
gene id G74368
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39232304 ~ 39238764 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCACAGTGAACTACGCTCCCCAACCAGGAAGTGCGAGGCGGAGAGCCGCGGCTGGAAGCGAGCCCCGCCAGCAACACAGTTCGTTCTGGAATGCGAGTGCGGGCAGGGCACACCTATGACATCATCCCCAATCCCGCACCAACACACGCGTCTGCGGGGCTGCACGGAGGGCACCGAGCTCACTCAACCAGGGGAGTCGAAAGGAAATGACAACACTTATGTCCAGGAACCCCCGGCCCAACACACAGATCCGAGAATCCACTAAACAGTCACACCGGTGCACCCGAGGGGAGCAGCACTGACCACCGAGTGGCAGCCCCGCAGCGGCCCGCTCCCGCACACCGGGACAGGAAGTCCTGCTCGGCACGTTAAACACGGCCTGCAGCGAGCAGCCCTCCTGCCTGGTAGCCCTGTGGCCTGCAGCGGGGCTCTGCCGGCCCGGGTGCGGCGTGCGGGCCCTACTGGGCCGAGAGCGGCCGCGCAGCTGCCCGAGGCGAACCGGTTCGGACGGATGGCAGGCAGGCGAGTGCGCATGCGCAGTGCAGTACCGGCTGGGGGCCGCGGTTACAGCAGGAAGTGAGACGGCAAGCGAGCAGCGAGGAAGCGGAGCAGCGGAGCTGAACACACCGCCCGCCGACAGCCGCGGCCCGCAGCGCACACCCGCCCTGCCCCCACGGGCAAAGTCTAACTGCAAGAGCTACCTCTACGAGCTGGGCTCCCCCGCAGCCTCACTCCACCCGCCCCGGCCCGGGCTCAGTGCACCCCGGCCACAGCGAGGACCGCCTGGGCTTCaaaccctctccctccctctccctcatgGATCACTTCCTGCACTAACTTCTACGGTTTCTTTGCGCAGTTAGACAGACCCGAGCAGCGCCCACCCGCCCCGCACCTCCAGCACCAACTCACTCACACACCGCGCCGGCACCGGACGGCAGCGCACAGCCGGACTCCGCGCCCTCCTACCTGGCGGCGGACCGTGAGCGCCCTACCTGCGGGATTGTAGGACAGGGAGGTcggcagtgagtgtgtgtccggGTCGCTGCTCGCTGGGACGGGAGTCTGTGCGCGTCTGTCGCCGCGACTCTTCACGGGCTCTGGAGTCTCGCGTCTCGCACGGCAGGGCGCGGCCGGCGGGGGGGGCGGGGCCTCGGCGCCGGCATCCGCCTTCCGCGCCCAATCAGCAGCCGGCGGGACTCTCGCAGTGGGCCGGGCTCAGCCAATGGCGGGGCAGGGAAGGGGCGGGACTCGGGGCGCAGTGTGAGCCGGATGGAGAGACGCGGAGATAAGCGAGTGTTTAATTACTGAGTGGATGGATTCCAGTCCCTGCAGTTCCAGACCTGCTCTTCCTGTATCGAATTTCAAACTCAAATACATGAGGGTGTGCTGAGccacctggagagagagagagagagagagagaggcagggagggataGAGGAGTGAGAGGGGGACTCTACAATGGCTGCCTGCCATAATCCCTGTACAGTCTCGATAGGTCATCTGTGTTGGAAACATTTCTGACAATGGTCACGGCGACAAAACACCTCAAATTGAACTGAATGGAGTGAGGAGCATGCGGTGTCTGTGTTCAGGGGGCAGGTGAGTGCGGTGTCTGTGTTCAGGGGGCAGATGAGTTCAGGCCAGGAGGGAGCAGCTCGTTGCAGTGGAATGCTAATTGCCTCTGAAGACGAGGGAGGGACAGATGTGCTCTGACTGATGGAGGAGAGGAATGTGAATGACATCGCTGAGCAACTGCCACACCCCCCCTCACCTCTCCAGTGTGTGTATGGTAGTGTTCAGTACACTtagcactgcacacacacaagcctcCCCAGCCctgaacacacatacacatacacacacccccCTCAGCACTAAACACACAGAAGAACATAGGAAAGTgtacaattgagaggaggccattcgccccatcgtgcttgtgatccaaggatcctatccagtctgtttttgaattttcccaaattgtctcttcaaccacatcactgggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtccatgtccccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcaggtcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgtccacagtatgcAGATGAGctctacacacacaccttcagcactgactatatacacacacacacacacatgaacccCTGGATGAATAgctgacacagacacagctctCAGAGCATCTTGCTAtgaatttattcacatttattttcacattaaaataataaattctcAATCTCCTGAGACCCTCACCTCCCTACTGCAGTGCTTcgcagcacagagacacacagatggacagacaagtgtagacagacagacagactcctACAGGCAGGACTGAACAGGGATGTGCCTGAGGGCTGGTGGTCAGGCTGTGGCTCAAAGTGGCCAGAGCAGAGGCAGCACTGAGCTATGCTGTGGCTTCACACAGTCAGGCCGGACAGGAGGGCCAGACTCCTCGGTCCGAGCGCTTCACAGCAGACTGACGGACTGCTCTCATCTAGGACCAGCTGCCCCTCTTACATGGGGGAGGGCTGCCCCCCTGTGGTCAGATGCAGAACCGCAGTCTGGCCAGGAGAatgacagagtgagagagacagacagacacagaaagataTGACAGACAGACGCCCAAACCTAACCAGACTGCCAGCACTGGGCTGActgacagagggacagacagagagacagcagaAGCCTGGGCTCCAGTGGACTCTCTGGGGTCAGAGTTCACAGGGGACCCAGGTTGCGGGCACAGCCTCACTGTCCAATCAGCTTGCTGACAAAGGCATCCAGCTGGTCCTCGTCTTTGATGCCGACAAACTTATCAACGACATCGCCGCCCTTCATAGCGATCACTGTGGGAACGGCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92771 lncRNA downstream 49670 39182366 ~ 39182634 (-) True G74307
TU92735 lncRNA downstream 190256 39002622 ~ 39042048 (-) True G74277
TU92693 lncRNA downstream 364378 38867561 ~ 38867926 (-) True G74239
TU92683 lncRNA downstream 395165 38836895 ~ 38837139 (-) True G74232
TU92675 lncRNA downstream 428419 38802916 ~ 38803885 (-) True G74224
TU92855 lncRNA upstream 19766 39258530 ~ 39260360 (-) False G74375
TU92839 lncRNA upstream 55187 39293951 ~ 39295579 (-) False G74367
TU92844 lncRNA upstream 55187 39293951 ~ 39299385 (-) False G74367
TU92845 lncRNA upstream 55187 39293951 ~ 39299385 (-) True G74367
TU92843 lncRNA upstream 58228 39296992 ~ 39299385 (-) False G74367
AMCG00014901 mRNA downstream 15206 39205047 ~ 39217098 (-) True AMCG00014901
AMCG00014902 mRNA downstream 55643 39138823 ~ 39176661 (-) True AMCG00014902
AMCG00014897 mRNA downstream 395952 38728989 ~ 38836352 (-) True AMCG00014897
AMCG00014895 mRNA downstream 544243 38676409 ~ 38688061 (-) True AMCG00014895
AMCG00014894 mRNA downstream 603104 38600421 ~ 38629200 (-) True AMCG00014894
AMCG00014903 mRNA upstream 24377 39263141 ~ 39270244 (-) True AMCG00014903
AMCG00014905 mRNA upstream 43390 39282154 ~ 39285347 (-) True AMCG00014905
AMCG00014906 mRNA upstream 139680 39378444 ~ 39379116 (-) False AMCG00014906
AMCG00014910 mRNA upstream 292562 39531326 ~ 39536843 (-) True AMCG00014910
AMCG00014914 mRNA upstream 351794 39590558 ~ 39591658 (-) True AMCG00014914
TU92703 other downstream 311951 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 587766 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 741364 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 799429 38432263 ~ 38432875 (-) True G74115
TU92533 other downstream 819073 38412160 ~ 38413231 (-) True G74107
TU92854 other upstream 19298 39258062 ~ 39260360 (-) True G74375
TU92969 other upstream 399135 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 662706 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 696129 39934893 ~ 40012081 (-) True G74593
TU93146 other upstream 705966 39944730 ~ 39951070 (-) True G74591

Expression Profile