RNA id: TU92867


Basic Information

Item Value
RNA id TU92867
length 563
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G74387
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39314566 ~ 39315128 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctggtaactcgctgccacagctcaacctgtagctctgttgccagaaccggaaccagaaaccaaccaagtctttgccggcaacagaagagttaaactgggagaaggagattgagccgtacgaagaattcttttaaaggactttattaaataaagaactttacagactgcgctgcccgcctgtgcccacctgatcagtggagttttacagctggacaattgactaagtcgactgtatacgaaagtgtcagtcatttaaatagctactTGAGTCTTTAGAAACTCAACCCTTGGAaccgaacagggccctgctttcctcaaagactttgtcttcaagtaactacggtggaaaccctgcttacaaagaagattttgtgcacaaccttggagccttcaaaccagtggaaaatctgtttggaaaagactctacattcgcgaaaccccaacttccaggtgcatcgactgagtgtgtctgactaacaatactaataagagactcaccttcgtcttactaactggtattgtagtcaatgtgtttgtaattttgtgtaacgatTTGTGTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92866 lncRNA downstream 8596 39305708 ~ 39305970 (-) True G74386
TU92865 lncRNA downstream 11342 39303021 ~ 39303224 (-) True G74385
TU92864 lncRNA downstream 12358 39301924 ~ 39302208 (-) True G74384
TU92844 lncRNA downstream 15181 39293951 ~ 39299385 (-) False G74367
TU92875 lncRNA upstream 23202 39338330 ~ 39401229 (-) True G74395
TU92884 lncRNA upstream 63047 39378175 ~ 39379153 (-) True AMCG00014906
TU92894 lncRNA upstream 138525 39453653 ~ 39453963 (-) True G74413
TU92896 lncRNA upstream 147951 39463079 ~ 39477104 (-) True G74414
TU92912 lncRNA upstream 183575 39498703 ~ 39499677 (-) True G74427
AMCG00014905 mRNA downstream 29219 39282154 ~ 39285347 (-) True AMCG00014905
AMCG00014903 mRNA downstream 44322 39263141 ~ 39270244 (-) True AMCG00014903
AMCG00014901 mRNA downstream 97468 39205047 ~ 39217098 (-) True AMCG00014901
AMCG00014902 mRNA downstream 137905 39138823 ~ 39176661 (-) True AMCG00014902
AMCG00014897 mRNA downstream 478214 38728989 ~ 38836352 (-) True AMCG00014897
AMCG00014906 mRNA upstream 63316 39378444 ~ 39379116 (-) False AMCG00014906
AMCG00014910 mRNA upstream 216198 39531326 ~ 39536843 (-) True AMCG00014910
AMCG00014914 mRNA upstream 275430 39590558 ~ 39591658 (-) True AMCG00014914
AMCG00014915 mRNA upstream 277486 39592614 ~ 39599496 (-) True AMCG00014915
AMCG00014917 mRNA upstream 325283 39640411 ~ 39641256 (-) True AMCG00014917
TU92854 other downstream 54206 39258062 ~ 39260360 (-) True G74375
TU92703 other downstream 394213 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 670028 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 823626 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 881691 38432263 ~ 38432875 (-) True G74115
TU92969 other upstream 322771 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 586342 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 619765 39934893 ~ 40012081 (-) True G74593
TU93146 other upstream 629602 39944730 ~ 39951070 (-) True G74591
TU93152 other upstream 669566 39984694 ~ 40012081 (-) False G74593

Expression Profile