RNA id: TU92905



Basic Information


Item Value
RNA id TU92905
length 958
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G74422
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39498703 ~ 39499660 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tcaccagatgctgtgtttcttccctggtgatgctctgccaggcctgcactgcagttgTCTTTAGtgcctgcttgttcttggggcatcaGAGAGAtcgcaaaaacattaggtgtgaccaaatcaactatttggtacatccttaaaaagaaagaacgcgctggtgagctcaggaatatcaaaaggcccggaagaccacggacaacaactgtggtggatgacagaagaattctttccctggtgaagaaaaaccccttaacaacagttggccagatgaagaacaccctccaggaggtagacgtatctttgtcagtcaacaatcaagagaagacttcaccagtaaatacagagggcttaccacaagatggaaccattggtaagccccaaaaacaggaagaccagattagggtttgcaacaataacaattagaAGGCGATTAATACGAATTTTAAATTCTCCTAATtagaattgcgtttcaataacAGTTCAGGGAACATAATCTAGTAGCAAATCAGACAGAAAGGCAAATTCACTCattaatatccagttagagtggatcattattcgaattcagccaaacttaatgtaagaaatcagtaataataataataataataaggcatccacatatgcacatgaatacattacatttgtcaaAAGAACTGACCCTCCATagaagcactgtattttcaaaagccttctaaTTGTTCGTTGTACTCTGATACCATTTAactccaaaataataataatgtacacataagaaaataacatgtaCTGATTGGGAATCAAACCCAGATCACTAGGTTCACTGTGCTGTTccctaaccactgcaccacctgatgtacaatgtattttatgtcaCCTGCAGTGGTCACTGCCAGCTGTcgtgactaattgtataaaattgtattattgggGTTTTtgtctcaaattaatgtattgattaaaaatatacattata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92830 lncRNA upstream 16996 39476816 ~ 39481707 (+) True G74363
TU92804 lncRNA upstream 192729 39305580 ~ 39305974 (+) True G74338
TU92799 lncRNA upstream 212899 39285294 ~ 39285804 (+) True G74333
TU92796 lncRNA upstream 218735 39279236 ~ 39279968 (+) True G74330
TU92795 lncRNA upstream 221865 39276240 ~ 39276838 (+) True G74329
TU92928 lncRNA downstream 85262 39584922 ~ 39585159 (+) True G74442
TU92921 lncRNA downstream 87753 39587413 ~ 39588507 (+) True AMCG00014909
TU92947 lncRNA downstream 102192 39601852 ~ 39602098 (+) True G74459
TU92983 lncRNA downstream 148169 39647829 ~ 39659512 (+) True G74484
TU92997 lncRNA downstream 159873 39659533 ~ 39659958 (+) True G74491
AMCG00014904 mRNA upstream 109016 39381101 ~ 39389687 (+) True AMCG00014904
AMCG00014900 mRNA upstream 238426 39237624 ~ 39260277 (+) True AMCG00014900
AMCG00014899 mRNA upstream 265698 39227927 ~ 39233005 (+) True AMCG00014899
AMCG00014898 mRNA upstream 530681 38961953 ~ 38968022 (+) True AMCG00014898
AMCG00014896 mRNA upstream 714531 38783395 ~ 38784172 (+) True AMCG00014896
AMCG00014908 mRNA downstream 12112 39511772 ~ 39529811 (+) True AMCG00014908
AMCG00014907 mRNA downstream 66073 39565733 ~ 39575588 (+) True AMCG00014907
AMCG00014909 mRNA downstream 84378 39584038 ~ 39588279 (+) False AMCG00014909
AMCG00014913 mRNA downstream 119148 39618808 ~ 39621018 (+) False AMCG00014913
AMCG00014912 mRNA downstream 123766 39623426 ~ 39626200 (+) True AMCG00014912
TU92814 other upstream 22884 39336268 ~ 39475819 (+) True G74348
TU92678 other upstream 687575 38810693 ~ 38811128 (+) True G74227
TU92541 other upstream 1065842 38432374 ~ 38432861 (+) True G74114
TU92227 other upstream 1980297 37518108 ~ 37518406 (+) True G73850
TU91690 other upstream 4104054 35390634 ~ 35394649 (+) False AMCG00014836
TU92948 other downstream 107227 39606887 ~ 39621186 (+) True AMCG00014913
TU93044 other downstream 365422 39865082 ~ 39872003 (+) False AMCG00014923
TU93045 other downstream 365960 39865620 ~ 39872003 (+) False AMCG00014923
TU93040 other downstream 373480 39873140 ~ 39875428 (+) True AMCG00014923
TU93074 other downstream 451528 39951188 ~ 39953257 (+) False AMCG00014925

Expression Profile