RNA id: TU92932


Basic Information

Item Value
RNA id TU92932
length 469
lncRNA type inter_gene
GC content 0.64
exon number 2
gene id G74446
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39570678 ~ 39571406 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTCCTTCTCCGACTTCTCCTTGTCTcgctcctccttcttcttcttcttctcgtTCTGGGATTCGCTGCCGCCGTGGTGATGCACAATGGGGGGCGGGCTCGTGGCATAGACCCCGCCCACTGACCCAACCACCACGCCGTGATTGGAGGAGCTGTGGGAGTGGGTGTGTCCCTGTGTGACCTCGCCGGAGAGGAGGAcagtgcCTGTCCGCCCCATCCCCGCCGCCCCGCTGCTGCTCTTTTTGCTGGTCTTGCTGTGCTTCTTGTCCCCGCGGTGCCGGTCCTTCTCCCGCTCCCTGTCGCGCTCCCGCTCCCTGTCCTTCTTCTTCTTGCTCTTCTtactcttcttcttcttcttctgcaccTCCCGGTACGAGTCATCAATCACCAGCTCCCCTGCCTCCAGTTCCGCCCCCGAGGAGGAGGAGTCACCCCCAGGGCCCACCGCCCCGCACAGCCCTGGGGCC

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92912 lncRNA downstream 71001 39498703 ~ 39499677 (-) True G74427
TU92896 lncRNA downstream 93574 39463079 ~ 39477104 (-) True G74414
TU92894 lncRNA downstream 116715 39453653 ~ 39453963 (-) True G74413
TU92875 lncRNA downstream 169449 39338330 ~ 39401229 (-) True G74395
TU92884 lncRNA downstream 191525 39378175 ~ 39379153 (-) True AMCG00014906
TU92952 lncRNA upstream 19090 39590496 ~ 39591405 (-) False AMCG00014914
TU92961 lncRNA upstream 51948 39623354 ~ 39624793 (-) True G74469
TU93009 lncRNA upstream 128157 39699563 ~ 39702594 (-) True G74501
TU93019 lncRNA upstream 164638 39736044 ~ 39736401 (-) True G74510
TU93021 lncRNA upstream 172722 39744128 ~ 39744359 (-) True G74512
AMCG00014910 mRNA downstream 33835 39531326 ~ 39536843 (-) True AMCG00014910
AMCG00014906 mRNA downstream 191562 39378444 ~ 39379116 (-) False AMCG00014906
AMCG00014905 mRNA downstream 285331 39282154 ~ 39285347 (-) True AMCG00014905
AMCG00014903 mRNA downstream 300434 39263141 ~ 39270244 (-) True AMCG00014903
AMCG00014901 mRNA downstream 353580 39205047 ~ 39217098 (-) True AMCG00014901
AMCG00014914 mRNA upstream 19152 39590558 ~ 39591658 (-) True AMCG00014914
AMCG00014915 mRNA upstream 21208 39592614 ~ 39599496 (-) True AMCG00014915
AMCG00014917 mRNA upstream 69005 39640411 ~ 39641256 (-) True AMCG00014917
AMCG00014916 mRNA upstream 77398 39648804 ~ 39657562 (-) True AMCG00014916
AMCG00014920 mRNA upstream 191164 39762570 ~ 39764640 (-) True AMCG00014920
TU92854 other downstream 310318 39258062 ~ 39260360 (-) True G74375
TU92703 other downstream 650325 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 926140 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 1079738 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 1137803 38432263 ~ 38432875 (-) True G74115
TU92969 other upstream 66493 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 330064 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 363487 39934893 ~ 40012081 (-) True G74593
TU93146 other upstream 373324 39944730 ~ 39951070 (-) True G74591
TU93152 other upstream 413288 39984694 ~ 40012081 (-) False G74593

Expression Profile