RNA id: TU92961


Basic Information

Item Value
RNA id TU92961
length 563
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G74469
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39623354 ~ 39624793 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGGGCAGCGCTGTCACATCAGTACCTGGGCCTGTTTTAGCTTGTTCTCCAGGTCGTCCAGGTCCAGGTGCCGGTACCGGTACTTCTGGGCCTTGCAGAGGCGGATCCCATCAATGATTGACGCGTGGTTCAGCTCGTCTGATAGGACGGCATCCTCTGGGGTCAGCAAGACCTGACAGGAGCAGagcctgtgtgtcagtgtgtcagtcagtcagtcggtcagttAATAAGTGTCAGTCGGTTGGTCAGTCCCTCTGCACCTCGAACAGTCCTGCGTTGGCGTCAAAGCAGCTGGCGTACAGGATGGCGTCCTCCCGCTCATGGAACTGAGCGATCTTCTTCTCCAGAGCCTTGTGCAGGCCTGTGTCCCGCAGATGAAGCGCACTGAGCTCAGCCCGGCCCCGTACTGCTGCAGCGCCGCCACGCCGGCCTCGATCACCGCCGGGTGGCTGGACAGACCCAGGTAGTTATTGGCACAGAAATTCAGGATGTCTGAGGGAATTAGGGAGAGATGGACAGGGAGGggttaatacacacacagctactGCACactgcccagaga

Function

GO:

id name namespace
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92952 lncRNA downstream 31949 39590496 ~ 39591405 (-) False AMCG00014914
TU92932 lncRNA downstream 51948 39570678 ~ 39571406 (-) True G74446
TU92912 lncRNA downstream 123677 39498703 ~ 39499677 (-) True G74427
TU92896 lncRNA downstream 146250 39463079 ~ 39477104 (-) True G74414
TU92894 lncRNA downstream 169391 39453653 ~ 39453963 (-) True G74413
TU93009 lncRNA upstream 74770 39699563 ~ 39702594 (-) True G74501
TU93019 lncRNA upstream 111251 39736044 ~ 39736401 (-) True G74510
TU93021 lncRNA upstream 119335 39744128 ~ 39744359 (-) True G74512
TU93024 lncRNA upstream 128902 39753695 ~ 39753938 (-) True G74515
TU93159 lncRNA upstream 338137 39962930 ~ 40005067 (-) False G74597
AMCG00014915 mRNA downstream 23858 39592614 ~ 39599496 (-) True AMCG00014915
AMCG00014914 mRNA downstream 31696 39590558 ~ 39591658 (-) True AMCG00014914
AMCG00014910 mRNA downstream 86511 39531326 ~ 39536843 (-) True AMCG00014910
AMCG00014906 mRNA downstream 244238 39378444 ~ 39379116 (-) False AMCG00014906
AMCG00014905 mRNA downstream 338007 39282154 ~ 39285347 (-) True AMCG00014905
AMCG00014917 mRNA upstream 15618 39640411 ~ 39641256 (-) True AMCG00014917
AMCG00014916 mRNA upstream 24011 39648804 ~ 39657562 (-) True AMCG00014916
AMCG00014920 mRNA upstream 137777 39762570 ~ 39764640 (-) True AMCG00014920
AMCG00014924 mRNA upstream 195770 39820563 ~ 39822089 (-) True AMCG00014924
AMCG00014927 mRNA upstream 334032 39958825 ~ 39960996 (-) True AMCG00014927
TU92854 other downstream 362994 39258062 ~ 39260360 (-) True G74375
TU92703 other downstream 703001 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 978816 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 1132414 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 1190479 38432263 ~ 38432875 (-) True G74115
TU92969 other upstream 13106 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 276677 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 310100 39934893 ~ 40012081 (-) True G74593
TU93146 other upstream 319937 39944730 ~ 39951070 (-) True G74591
TU93152 other upstream 359901 39984694 ~ 40012081 (-) False G74593

Expression Profile