RNA id: TU92983


Basic Information

Item Value
RNA id TU92983
length 2645
lncRNA type inter_gene
GC content 0.56
exon number 3
gene id G74484
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39647829 ~ 39659512 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaatgattattatcatcactGTTATTGCTCCTCAGTATGGCCCAGTGTTTCCAGTCCCCTCCTGCACTggaccccaccccctccccaagCCCCAGTCAGGACCGGTTCCGTCAGAAACCACTCGGGTCTCCTTGCTCAGTTCTGGACTGGTACTGGTTCTCTTAGACCCACATGCACTCAAGAGTTCACACCCAGAAGTTTGCCAGCGTTGAGGCGGGGTCTGACAGAACCGCACCGATGCCCAGTGCCAGAGACGCAGTCTAGTTGACCGTTGCTCTGGTTCCGATTCTGGTTGGCTTTAGTGGCTACTGGGCTCTGACACAGGGGTTCTGCTGAGGAGGCTGGAGTTGACAGGCGTGAAACGTGTTGTGAATCCTCTGGTACAGTCATTGGGTCGGGCCCCAGGGGGAGAGCAGCAGCTCATTAAGACGGTATCTGTTGGGTTCTGACACTGCTCTGGGTCAGGGCCTGGGTCCAAGTGCTGGTTCAGGTCCTGTCATTCCTCCCGGGTTCCAAGTCCCCAAGCGACAGACTGTTTGACCATGTGCTGGGCTTAACAAGGAGAGTTCACTAAGACCTGGTGGTTCTGGGTGGGGACCCATTTCTCCACACTGCAGAGGTCCGAGCCTGGTCCTGATCCAGCCCAGCCTGGGGTGGAGCTTTTGCTGGGCCCGACTGTGTGTCCagctgtgtgtccagtgtgggctGTGTGTCCAGCTGTGTGTCCAGGGTGGGCTGTGTATCCAGTGTGGGCTGTGTGTCCagctgtgtgtccagtgtgggctGTGTGTTCAGCTATGTGTCCagctgtgtgtccagtgtgggctGTGTGTTCAGCTATGTGTCCagctgtgtgtccagtgtgggctGTGTGTCCAGCTATGTGTCCAGGGTGTAGTTTGTGTCCAGCTGTATGTCCAGTGTGGGCTGTGTGTCCAGCTGTATGTCCAGTGtgggctgtgctgggctgtcCAGGGAAGGGCTGAGAGTGTGGGCGGTGGGCGTGGGGGGCACCGGGGCAGGGGCGGGGCGGGGCCAGCGCTGGTCGAACTTGTGGAAGAATAGGGGGTCACTGAGGGGCCCGCTGTGCACGATGCGGTAGAGCAGCACCACCAGGGCCACCACCAGGCAGCTGATCAGCAGGAAGGGCAGGAAGGGCCGGACCGCCCCCCAGGCCACGCCCACCCCGTATGCCCAGCCACCCCGGTCCCGCACGTGGGTGGGCCGACGCGACGAGCCCGGGGGGGGCAGGAAGGGAGACCAGCCCGCCCAGCCACCGTCCCGGTCTCTGCCCCGGCCCCCGCCACCGCCTCTTCCaccgcctcctcctccgccgCCTCCTCCACCATTCCCCCCACCACCGCCATTGCCCCCCGGGTCTCGATCCTGAGAGGGGGAGTCCATTGCTTCAAAGCACAACAGATGGCTGGGGCTTCAGCTGGAGGGGGCACTCAGGAAAGTAATCATCAGTTAGGCATGGTTGGAGAAGAGTAGGTGAAAAGCTGATAGGAcagtcaattaagcaattagtaGCTTAAGGAGAACTGGGCATTGCTGGGATAAGACATGCTATTCAATCTGtcaatcaattaaccaattatcTCAGCACAGTAATCAATTAGCCCTGGGGTGGGCAGGATAATCTTCTCTGCTGGGAGGACAGCACACGGCTAGATCAATTAACACAAATCCCCCAACCAATCAGTCCTTCAGTCCATCGGTCTCACGATCAATCAACTAATCAATTAAATCCAGTGTAACTGCTGTGTCCCCAGGTTACCGCTGTGTCCCCGTTCAACGCTGTGTCCCCTGGTTAATGCTGTGTCCCCAGGTCACCGCTGTGTCCCCCGTTCAATGCTGTGTCCACACACCACTGCTGTGTCCAGTAGTTGATGTAGTATCCTTGGTAATGCTTGTATCTCTCCGTCACGTGAAATGCCAAAACTTAATCATACAAGTTATTTCATGAAGACggtctccttctctccctcgatctctctctccttctcccgcTCCAAATGTCCCaagtgtgcacacacacacacacacacacacacaaactcccaCAGTCTCACACCATGTCTACACACTCTCAGAGATGTCCATCTGTCCCACTATCTGTCCAGGCTGGCTGTCCCTCTGTCTATGTGTCCTCCTGACTCTCTGTCCTGCAGCACATCTGttatttagtttagttatttAGTCTGTCATTtgtcagggagagagagagagagagagagagagagagaggcagctcATACTGACTAaaccctgactgactgagagagggagagagagggaggattGGGTTCACATGGGTGTGTTCTGCTGAGTCAGATGTTATTTGGAGAATTCGACTTGtcaggaaaagagagagacgagtgagagagtgactggagggagaaagagagagggagatagacaGTGATTGGAGGGGTAGAGAGAGGGAACGATACTCATAGACAGGcactcactctctgtctctctctctcactcccagtGAGGAATCCTGTAGCCAGCTGACTGATTACTGCAGCTATTAATACTGCACTCAGAGGCTTTAGGACAAGACACACCTGTCCTAATTCAGGCGTTGCCCTACTCCCTGCCAGCAGCCCTCTACAACACCTGCTCCGTGACATGTG

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process

KEGG:

id description
ko00680 Methane metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92947 lncRNA upstream 45731 39601852 ~ 39602098 (+) True G74459
TU92921 lncRNA upstream 59322 39587413 ~ 39588507 (+) True AMCG00014909
TU92928 lncRNA upstream 62670 39584922 ~ 39585159 (+) True G74442
TU92905 lncRNA upstream 148169 39498703 ~ 39499660 (+) True G74422
TU92830 lncRNA upstream 166122 39476816 ~ 39481707 (+) True G74363
TU92997 lncRNA downstream 21 39659533 ~ 39659958 (+) True G74491
TU92991 lncRNA downstream 22743 39682255 ~ 39722288 (+) False G74486
TU92992 lncRNA downstream 35650 39695162 ~ 39722288 (+) True G74486
TU93013 lncRNA downstream 66954 39726466 ~ 39734537 (+) True G74505
TU93014 lncRNA downstream 74211 39733723 ~ 39734537 (+) False G74505
AMCG00014911 mRNA upstream 11268 39630690 ~ 39636561 (+) True AMCG00014911
AMCG00014912 mRNA upstream 21629 39623426 ~ 39626200 (+) True AMCG00014912
AMCG00014913 mRNA upstream 26811 39618808 ~ 39621018 (+) False AMCG00014913
AMCG00014909 mRNA upstream 59550 39584038 ~ 39588279 (+) False AMCG00014909
AMCG00014907 mRNA upstream 72241 39565733 ~ 39575588 (+) True AMCG00014907
AMCG00014919 mRNA downstream 47549 39707061 ~ 39707433 (+) True AMCG00014919
AMCG00014918 mRNA downstream 48022 39707534 ~ 39707752 (+) True AMCG00014918
AMCG00014922 mRNA downstream 172956 39832468 ~ 39846425 (+) True AMCG00014922
AMCG00014923 mRNA downstream 211923 39871435 ~ 39875105 (+) False AMCG00014923
AMCG00014921 mRNA downstream 216688 39876200 ~ 39887566 (+) True AMCG00014921
TU92948 other upstream 26643 39606887 ~ 39621186 (+) True AMCG00014913
TU92814 other upstream 172010 39336268 ~ 39475819 (+) True G74348
TU92678 other upstream 836701 38810693 ~ 38811128 (+) True G74227
TU92541 other upstream 1214968 38432374 ~ 38432861 (+) True G74114
TU92227 other upstream 2129423 37518108 ~ 37518406 (+) True G73850
TU93044 other downstream 205570 39865082 ~ 39872003 (+) False AMCG00014923
TU93045 other downstream 206108 39865620 ~ 39872003 (+) False AMCG00014923
TU93040 other downstream 213628 39873140 ~ 39875428 (+) True AMCG00014923
TU93074 other downstream 291676 39951188 ~ 39953257 (+) False AMCG00014925
TU93084 other downstream 304256 39963768 ~ 39972411 (+) True AMCG00014928

Expression Profile