RNA id: TU92997



Basic Information


Item Value
RNA id TU92997
length 287
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id G74491
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39659533 ~ 39659958 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCAGAGTGCAGAAGACACAGGGGAGCAGGAACTAAGGATGGCAGTGGGAAGAGAGGGGATAAGGGGGCAGCTGGAGGAGAGATGAGGAGAGAGACCTGGCTCTTCACCCGTGGCCAGACCCAAGCAGACGGCTCCTCTGAGGCGGCGGTGCTCCACTGTTCAAGGTCCAGGACTGGTGCTGAGCTGAGATAtctgaggggagagagaagctGAATGGTCGGGTTTTGTGAGAAGACATGATGGAGCAGTGCTGCCAGGGGAGCCCAGGAGCAGCTAGGGGCCTGCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92983 lncRNA upstream 21 39647829 ~ 39659512 (+) True G74484
TU92947 lncRNA upstream 57435 39601852 ~ 39602098 (+) True G74459
TU92921 lncRNA upstream 71026 39587413 ~ 39588507 (+) True AMCG00014909
TU92928 lncRNA upstream 74374 39584922 ~ 39585159 (+) True G74442
TU92905 lncRNA upstream 159873 39498703 ~ 39499660 (+) True G74422
TU92991 lncRNA downstream 22297 39682255 ~ 39722288 (+) False G74486
TU92992 lncRNA downstream 35204 39695162 ~ 39722288 (+) True G74486
TU93013 lncRNA downstream 66508 39726466 ~ 39734537 (+) True G74505
TU93014 lncRNA downstream 73765 39733723 ~ 39734537 (+) False G74505
TU93020 lncRNA downstream 84167 39744125 ~ 39744360 (+) True G74511
AMCG00014911 mRNA upstream 22972 39630690 ~ 39636561 (+) True AMCG00014911
AMCG00014912 mRNA upstream 33333 39623426 ~ 39626200 (+) True AMCG00014912
AMCG00014913 mRNA upstream 38515 39618808 ~ 39621018 (+) False AMCG00014913
AMCG00014909 mRNA upstream 71254 39584038 ~ 39588279 (+) False AMCG00014909
AMCG00014907 mRNA upstream 83945 39565733 ~ 39575588 (+) True AMCG00014907
AMCG00014919 mRNA downstream 47103 39707061 ~ 39707433 (+) True AMCG00014919
AMCG00014918 mRNA downstream 47576 39707534 ~ 39707752 (+) True AMCG00014918
AMCG00014922 mRNA downstream 172510 39832468 ~ 39846425 (+) True AMCG00014922
AMCG00014923 mRNA downstream 211477 39871435 ~ 39875105 (+) False AMCG00014923
AMCG00014921 mRNA downstream 216242 39876200 ~ 39887566 (+) True AMCG00014921
TU92948 other upstream 38347 39606887 ~ 39621186 (+) True AMCG00014913
TU92814 other upstream 183714 39336268 ~ 39475819 (+) True G74348
TU92678 other upstream 848405 38810693 ~ 38811128 (+) True G74227
TU92541 other upstream 1226672 38432374 ~ 38432861 (+) True G74114
TU92227 other upstream 2141127 37518108 ~ 37518406 (+) True G73850
TU93044 other downstream 205124 39865082 ~ 39872003 (+) False AMCG00014923
TU93045 other downstream 205662 39865620 ~ 39872003 (+) False AMCG00014923
TU93040 other downstream 213182 39873140 ~ 39875428 (+) True AMCG00014923
TU93074 other downstream 291230 39951188 ~ 39953257 (+) False AMCG00014925
TU93084 other downstream 303810 39963768 ~ 39972411 (+) True AMCG00014928

Expression Profile