RNA id: TU93030



Basic Information


Item Value
RNA id TU93030
length 244
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G74521
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39796112 ~ 39840618 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


acggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggatcacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcttttaggtgagtgtatatatatataatgatcataacattatgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU93025 lncRNA upstream 40448 39755390 ~ 39755664 (+) True G74516
TU93022 lncRNA upstream 43561 39752197 ~ 39752551 (+) True G74513
TU93020 lncRNA upstream 51752 39744125 ~ 39744360 (+) True G74511
TU93013 lncRNA upstream 61575 39726466 ~ 39734537 (+) True G74505
TU93014 lncRNA upstream 61575 39733723 ~ 39734537 (+) False G74505
TU93093 lncRNA downstream 146884 39987502 ~ 40006654 (+) True G74557
TU93177 lncRNA downstream 261275 40101893 ~ 40138259 (+) True G74615
TU93222 lncRNA downstream 390999 40231617 ~ 40231881 (+) True G74647
TU93224 lncRNA downstream 392156 40232774 ~ 40233420 (+) True G74649
TU93234 lncRNA downstream 444283 40284901 ~ 40286138 (+) True G74656
AMCG00014918 mRNA upstream 88360 39707534 ~ 39707752 (+) True AMCG00014918
AMCG00014919 mRNA upstream 88679 39707061 ~ 39707433 (+) True AMCG00014919
AMCG00014911 mRNA upstream 159551 39630690 ~ 39636561 (+) True AMCG00014911
AMCG00014912 mRNA upstream 169912 39623426 ~ 39626200 (+) True AMCG00014912
AMCG00014913 mRNA upstream 175094 39618808 ~ 39621018 (+) False AMCG00014913
AMCG00014923 mRNA downstream 30817 39871435 ~ 39875105 (+) False AMCG00014923
AMCG00014921 mRNA downstream 35582 39876200 ~ 39887566 (+) True AMCG00014921
AMCG00014926 mRNA downstream 47482 39888100 ~ 39899640 (+) True AMCG00014926
AMCG00014925 mRNA downstream 110571 39951189 ~ 39953278 (+) True AMCG00014925
AMCG00014928 mRNA downstream 129645 39970263 ~ 39973070 (+) False AMCG00014928
TU92948 other upstream 174926 39606887 ~ 39621186 (+) True AMCG00014913
TU92814 other upstream 320293 39336268 ~ 39475819 (+) True G74348
TU92678 other upstream 984984 38810693 ~ 38811128 (+) True G74227
TU92541 other upstream 1363251 38432374 ~ 38432861 (+) True G74114
TU92227 other upstream 2277706 37518108 ~ 37518406 (+) True G73850
TU93044 other downstream 24464 39865082 ~ 39872003 (+) False AMCG00014923
TU93045 other downstream 25002 39865620 ~ 39872003 (+) False AMCG00014923
TU93040 other downstream 32522 39873140 ~ 39875428 (+) True AMCG00014923
TU93074 other downstream 110570 39951188 ~ 39953257 (+) False AMCG00014925
TU93084 other downstream 123150 39963768 ~ 39972411 (+) True AMCG00014928

Expression Profile