RNA id: TU93093



Basic Information


Item Value
RNA id TU93093
length 888
lncRNA type sense_over
GC content 0.45
exon number 4
gene id G74557
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39987502 ~ 40006654 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctttttttttttttCAGGATCCAGTCACTatcctttttattgtatttttggtgGGACGATGACAATCACATCATCGCCCTcagatagaaaaaaacattcaggtCACAAAGCTGGACAAATGCAGAGCTTCAAACAAGTCAAACATCTTCACACTGTAACTGCTtagaaaagaacagaacaagATTTATAgctatatttgttatatatatatataaatttgtaATTAAGCAACTAGTATATTCTCTGAAACAGTGACCCACAGAACAGAGGCACGTGGTGCGAGAGAGACAGCGCTAGGGAAACCACGCTGGAGCCGGGCATCAGGGCAGAACAAATACTGTGCCAGGATTGTGGAACCCATGATCTCCAATATCTCAGGGAGGCTGTTGGGGTTTCTGTGCAGGGAATCAAACTGCAGTTCTGCCCCTTTAATTGGTTAAATTGGTCcattgattggttaattgatccctagatttttttgggggggggatcCAGGAACTCTGCAACTGTACTGTGCTGCAGATTGGAGCTGAACTCTGGCACAGCTGACTCATGGTCAGGGGCTCCCATAGGTGCTCCATAAaatagaggaagagagagaggcatgCGCACAGAGTAGACAAGGTGGAACAAATGTAGTATGTGCTGGCGTTGCTTGGGGACTGTGGGGCCTGCAGTGAATCCCGACCTGCACTGGGAGTGtTCACAGGGTTGCTGGTTGTGATGATTGTTCTCGAGGTTACTGCAGGAGTCCTGGCCTTTCTGAACAGCAAAGAGGTGAGACAGGGCGTCACTAGGTCGTACAAAGAGGAACTCAAAAACACTCTCTCCCATTAAAGGAGGAGAGACACATCTATGGCTTAGAATTGAAAAGAAATCATTTCTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU93030 lncRNA upstream 146884 39796112 ~ 39840618 (+) True G74521
TU93025 lncRNA upstream 231838 39755390 ~ 39755664 (+) True G74516
TU93022 lncRNA upstream 234951 39752197 ~ 39752551 (+) True G74513
TU93020 lncRNA upstream 243142 39744125 ~ 39744360 (+) True G74511
TU93013 lncRNA upstream 252965 39726466 ~ 39734537 (+) True G74505
TU93177 lncRNA downstream 95239 40101893 ~ 40138259 (+) True G74615
TU93222 lncRNA downstream 224963 40231617 ~ 40231881 (+) True G74647
TU93224 lncRNA downstream 226120 40232774 ~ 40233420 (+) True G74649
TU93234 lncRNA downstream 278247 40284901 ~ 40286138 (+) True G74656
TU93239 lncRNA downstream 296578 40303232 ~ 40379753 (+) True G74661
AMCG00014928 mRNA upstream 14432 39970263 ~ 39973070 (+) False AMCG00014928
AMCG00014925 mRNA upstream 34224 39951189 ~ 39953278 (+) True AMCG00014925
AMCG00014926 mRNA upstream 87862 39888100 ~ 39899640 (+) True AMCG00014926
AMCG00014921 mRNA upstream 99936 39876200 ~ 39887566 (+) True AMCG00014921
AMCG00014923 mRNA upstream 112397 39871435 ~ 39875105 (+) False AMCG00014923
AMCG00014931 mRNA downstream 107474 40114128 ~ 40140409 (+) True AMCG00014931
AMCG00014932 mRNA downstream 140769 40147423 ~ 40151507 (+) True AMCG00014932
AMCG00014936 mRNA downstream 182055 40188709 ~ 40206799 (+) True AMCG00014936
AMCG00014939 mRNA downstream 204174 40210828 ~ 40211397 (+) True AMCG00014939
AMCG00014937 mRNA downstream 213818 40220472 ~ 40224003 (+) True AMCG00014937
TU93084 other upstream 15091 39963768 ~ 39972411 (+) True AMCG00014928
TU93074 other upstream 34245 39951188 ~ 39953257 (+) False AMCG00014925
TU93040 other upstream 112074 39873140 ~ 39875428 (+) True AMCG00014923
TU93044 other upstream 115499 39865082 ~ 39872003 (+) False AMCG00014923
TU93045 other upstream 115499 39865620 ~ 39872003 (+) False AMCG00014923
TU93214 other downstream 153247 40159901 ~ 40160578 (+) True G74642
TU93215 other downstream 155362 40162016 ~ 40163997 (+) True G74643
TU93243 other downstream 325333 40331987 ~ 40373863 (+) False AMCG00014942
TU93250 other downstream 331561 40338215 ~ 40340395 (+) False AMCG00014940
TU93241 other downstream 362483 40369137 ~ 40373863 (+) True AMCG00014942

Expression Profile