RNA id: TU93111


Basic Information

Item Value
RNA id TU93111
length 2486
RNA type TUCP
GC content 0.48
exon number 2
gene id G74569
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39901470 ~ 39983396 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gGAGAACCGAGCGGATATCGTCTAGTTCGCCAGGAAAGCGGACGAGGAGAGGGATCGTCTGCAGAagacagagaggaaaagagGACGAGCGACTGAGCAGAAGTGAGAGAAAGAGgcggaggagaagaagaagaagaagaaagggagAAGAGAAGAAGATTCCCCTTTGTTCCTCCGCGTTTGAAAGGATATACggtcaacatttatttatttttttccgaTAGGGAGAGAAAAGGgatctgggagagagagagaaaaacacaaggaCGTTTTTATTACTCCTTCATTCGGGGCTCTTGCTGGATTTATTtgactctttattttttaattatcatctattattatgattatggttatttattgaCACGGTTTTGGCTCCTGTTGGAAAGggaaagcgagagagagggaaaggcgAGCAACCTAAGAGAAAACCCATCGAGCGACTatacagctacacacacacatttgaaagcTGATTTCCGAGGCCCTGTCCAGGCCGGGCGGGGGGCTGTAGGTGCAGGAGGTGAGCGGGCGCTTTGTGCCGCAGAGACGCGGTCTGTGCGGCGGCTGCTGATTAGCGCTattgtgtgagggagagagggagacccAGACTGTTATCTAgggggcattttttttttagctttctAATTTTGAGGGAATCCGTAGTCTTACACGCCAGGCAACCCCCGCCCCCCTTTTCCTCCCTCTGTAGGATAATAACCACCCCCTCACAAACGCACTAAACAACGCATTGCCCCCCGTGTCTTATTCCTCggagcacacgcacacacccgcACACACAGGCCTGcatgtgtacatgtatgtgtcTGAACGTCGACCTCTGATCTCCCTTCCCCTCGTCGTCGAGCCTTTTGTCTGGGTCCCGGGGATCGATCCTGCGATACCGTGCCGCACAAAGGGGCCATTTGGACTGGAGGACGACCCCGGCTGCCCCGGCCTGCTGCGGGTATATAGGCGACAGTGCAGCGCACAGGGAGCACATCTCCTCCGAGCTACCGCACAATTACTCTGAGAATCGGAGTCAGTGTGGATGAGTGTGAAGCCATTATTGCTGTTACTATAATGAAGACGACGATCCGGATTGAAGCGATGACGTATTGAAAGGTTGACATCTGGGCATTGTGCTGTGGTTGGTTCTGGCAGATGTTTCTACAGCCCTTATGAAACGGCAGCAGTGCACCGCGTTACACTGAGCAGCTCATTGATTTATAACGCGCTATATTATTGATATTGGATTATATTTTTGGATAAACACGTTTTTGTAGagggatagggagagagagagagggagagagagtgtgacaGACGGAAAAGGAGGTAAAGACGGAGAGAGCCCCGTTGATGTCTGCGGAGGTGGTGACCATGATGATGCCCGTGTCTCGGGGGATCCTGGAGCGGGACAGAGACCTGGAGCCCCCCGCCTCCGGGACCCCCGGCTCGACCCGGGGCATGAAGCGAGGCGACCCGGAGCCCGACGCCTCCGTAGCGCCCAGCCTGACGGACGGTGCCGGGGCAGAGTGCAAGAGAGCCCGCATAGACGGGGCGGTGGGGGCCGGCGGCGAGCTCGGACAGGTGAGATGGagccactattattattattattattattattattattattattattattattattattattataattactatcatcacttttattacttttattattactattagtcACGTTTCTAATTGTTTGAGTTTTGCACTAATCATTTCCTTTGGATACAAATTTAGTTAACCTTTGCGTGAGATACGTTTTACAGAGTATAACTTGATTGACAGTTCGAGAGACCAATTGTAGACCAGGAGCGCACACAGCCATTGATTCCAAGCTGCCTTGAACAAACAGAGAGGTATATAAGCAGCACTGGTTGGACAAACTGGAGGGGGCCAAAGAGCAGGACTCAGGAAGCAGGACTCAGGACGCAGGACGCAGGAAGCAAGACTGAGCGGTGCAAGCAGAGCCAGACGGTCAACTTGAGGTTCAGCGATAACGGAAGGGGTCCAGAAGAACAACCCACAGAGGGGTGGAAGGAGAGGCGACCTAGATTGACTTGCATGGAGCAACCGAGGCTGTGCCGGTGGTGTACAAAACAAGACAGACGGAATAGAGGAGGACTAAAGCTGAGTATATTTGATCTGACCCCGAGTGAACATTAACctcaatgctttttttttaactgatttatttGGGTCACCACTGACTTTTAGATCATATTCAGCCCTGTTCTTTGTGAACAAACTGACTTTTAATTGAGCTCACCTCTGCTATTTAGAGGAACACAACTGACTTTTAAATTTAGCTCTGCACTGTTCTTATGCACATTTGACCTGTATTTTTATCTCGCTCTTTTTATATAGATGTTGCATTTAGACCGTAATGATTTTATCTAATGTTATAGCTTTTAGGTGGTTTTATGGGAttgtttttatggtttaatACTGTGGAATGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93024 lncRNA downstream 147532 39753695 ~ 39753938 (-) True G74515
TU93021 lncRNA downstream 157111 39744128 ~ 39744359 (-) True G74512
TU93019 lncRNA downstream 165069 39736044 ~ 39736401 (-) True G74510
TU93009 lncRNA downstream 198876 39699563 ~ 39702594 (-) True G74501
TU92961 lncRNA downstream 276677 39623354 ~ 39624793 (-) True G74469
TU93158 lncRNA upstream 4106 39987502 ~ 40005067 (-) True G74597
TU93149 lncRNA upstream 27673 40011069 ~ 40012081 (-) False G74593
TU93150 lncRNA upstream 27673 40011069 ~ 40012081 (-) False G74593
TU93153 lncRNA upstream 27673 40011069 ~ 40012081 (-) False G74593
TU93173 lncRNA upstream 59611 40043007 ~ 40043290 (-) True G74611
AMCG00014924 mRNA downstream 79381 39820563 ~ 39822089 (-) True AMCG00014924
AMCG00014920 mRNA downstream 136830 39762570 ~ 39764640 (-) True AMCG00014920
AMCG00014916 mRNA downstream 243908 39648804 ~ 39657562 (-) True AMCG00014916
AMCG00014917 mRNA downstream 260214 39640411 ~ 39641256 (-) True AMCG00014917
AMCG00014915 mRNA downstream 301974 39592614 ~ 39599496 (-) True AMCG00014915
AMCG00014930 mRNA upstream 46376 40029772 ~ 40039325 (-) True AMCG00014930
AMCG00014935 mRNA upstream 102380 40085776 ~ 40107665 (-) True AMCG00014935
AMCG00014933 mRNA upstream 170023 40153419 ~ 40160349 (-) True AMCG00014933
AMCG00014934 mRNA upstream 178990 40162386 ~ 40164580 (-) True AMCG00014934
AMCG00014938 mRNA upstream 251662 40235058 ~ 40268485 (-) True AMCG00014938
TU92969 other downstream 262513 39637899 ~ 39638957 (-) True G74477
TU92854 other downstream 641110 39258062 ~ 39260360 (-) True G74375
TU92703 other downstream 981117 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 1256932 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 1410530 38490323 ~ 38490940 (-) False AMCG00014891
TU93152 other upstream 1298 39984694 ~ 40012081 (-) False G74593
TU93302 other upstream 253006 40236402 ~ 40236795 (-) False AMCG00014938
TU93314 other upstream 308760 40292156 ~ 40294526 (-) False AMCG00014946
TU93316 other upstream 319835 40303231 ~ 40304085 (-) True G74726
TU93349 other upstream 418387 40401783 ~ 40405328 (-) False AMCG00014951

Expression Profile