RNA id: TU93148


Basic Information

Item Value
RNA id TU93148
length 1505
RNA type TUCP
GC content 0.45
exon number 3
gene id G74593
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39934893 ~ 40012081 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGCGTGCTGCGTCCCGCGCCGCCCCTTTAAACAGCCCCCTCGCTCTCGCGCAGCCCACAGTCCGTGCAGGAGCCCAGAGAGTCGAGCGCATATctatacacagagacacacagggtcGCTGCCGTGACACACTGTAttatacacactgtatatagagacacacagggtCGCTGCCGTGACACACTTAAttatacacactgtatacagagacacacacggACCGCTGCGATGGGGCTGGACGGCTGTGGCTACTGCTGCAAgatcatcctcatcatcatcaacatcatatTTGGGATCGCTGGGTTCCTGATGCTGGCGCTTGGACTGTGGTTGAGGTTCAGCTCGCAGACACGGGGATTCTTCGAGATCGACCTGAACACCCAGCAGTTTGTCATCGTGGTGACGTTACACAAAACCCcttcaactttaaacattgtgatattaatttcctgGCCTTGTATGCGGATGTGGAACAGATCTCTATTAAACCGCTACAACCGGACTTCGCAAATGATAACTGTGTCCGGGAGTACTTTAACCTGGTGGAAACAGCCAGAAAGGGCCTCAAAGACAAGCCTCTGGTAGTGGACCGTAAGGAGTTTGCCAGAGGTTACACACTGTTTGCATTCAACCTGAGCCCGGATCAAGAGTGCACCGGGCACTATTCACTCATAAAAACAGGGAACCTGTGAGCAGAAATTCGTTTTGCCCAGCCATTACCAACCACCGTGAACATGAtagtgtatgctgtttttgacaACATTGTTGACATTAACATGAGACGCCAAGTCCTTTACGACTACAGTTGAAAAACAATTGCCTTGTGGCTTTCACTAAACTGGTCATGAATACGCAACAGCTTGGGGCCATCATGACTAAGGACAGTTACACAAGAGACTATTTCCATGTGATAAGCTCCCCAAACAATCAGGAGTCCACAGGCCGGCCTGTTTCGACATCAACACACACCGACATGACTTACCTGAAGAGCACTGGCTCCCTATCTATCTAGGAGGAGATGGGAATGCTGAATTCTTTGATTCTTACGGATTCCCCCCCAATGCTCCTTTTTTCCCTAAATCAGTGTTAACAGTGTATAACTCCAAACAAGGTGCTTTATCCACAACATGTGGAAAccactgtgtgtatttttttacaacAGCGTTGTAAAGGTTTAGCTTATAATCAGATATTGgatttgtattctgaagatttaattagtaatgaCAACATGGTAATGCAGTTTGTGAAAAGTTGTAACAGGAGAACGAGACCTATTTGTTTAAGCTTCATGTAAATGAGAATTGTCAGATGTGTAACCGAATGCATGATTTTAGGATCTGTCATAATTGCTAAATCAGTCAtaaacagcagaaataaacaatgttagAACAGTGTATGAATAACACTATAGAATGATAGAataatgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaagcttaatgaCATTTGAAATTCTCATATATGTAATGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93024 lncRNA downstream 180955 39753695 ~ 39753938 (-) True G74515
TU93021 lncRNA downstream 190534 39744128 ~ 39744359 (-) True G74512
TU93019 lncRNA downstream 198492 39736044 ~ 39736401 (-) True G74510
TU93009 lncRNA downstream 232299 39699563 ~ 39702594 (-) True G74501
TU92961 lncRNA downstream 310100 39623354 ~ 39624793 (-) True G74469
TU93173 lncRNA upstream 30926 40043007 ~ 40043290 (-) True G74611
TU93190 lncRNA upstream 89812 40101893 ~ 40139101 (-) True G74625
TU93199 lncRNA upstream 116840 40128921 ~ 40129366 (-) True G74633
TU93315 lncRNA upstream 284780 40296861 ~ 40299179 (-) True G74725
TU93327 lncRNA upstream 325983 40338064 ~ 40340395 (-) True G74736
AMCG00014924 mRNA downstream 112804 39820563 ~ 39822089 (-) True AMCG00014924
AMCG00014920 mRNA downstream 170253 39762570 ~ 39764640 (-) True AMCG00014920
AMCG00014916 mRNA downstream 277331 39648804 ~ 39657562 (-) True AMCG00014916
AMCG00014917 mRNA downstream 293637 39640411 ~ 39641256 (-) True AMCG00014917
AMCG00014915 mRNA downstream 335397 39592614 ~ 39599496 (-) True AMCG00014915
AMCG00014930 mRNA upstream 17691 40029772 ~ 40039325 (-) True AMCG00014930
AMCG00014935 mRNA upstream 73695 40085776 ~ 40107665 (-) True AMCG00014935
AMCG00014933 mRNA upstream 141338 40153419 ~ 40160349 (-) True AMCG00014933
AMCG00014934 mRNA upstream 150305 40162386 ~ 40164580 (-) True AMCG00014934
AMCG00014938 mRNA upstream 222977 40235058 ~ 40268485 (-) True AMCG00014938
TU92969 other downstream 295936 39637899 ~ 39638957 (-) True G74477
TU92854 other downstream 674533 39258062 ~ 39260360 (-) True G74375
TU92703 other downstream 1014540 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 1290355 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 1443953 38490323 ~ 38490940 (-) False AMCG00014891
TU93302 other upstream 224321 40236402 ~ 40236795 (-) False AMCG00014938
TU93314 other upstream 280075 40292156 ~ 40294526 (-) False AMCG00014946
TU93316 other upstream 291150 40303231 ~ 40304085 (-) True G74726
TU93349 other upstream 389702 40401783 ~ 40405328 (-) False AMCG00014951
TU93466 other upstream 425258 40437339 ~ 40534709 (-) False AMCG00014949

Expression Profile