RNA id: TU93215


Basic Information

Item Value
RNA id TU93215
length 1341
RNA type TUCP
GC content 0.54
exon number 2
gene id G74643
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40162016 ~ 40163997 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAAGAGATATAGAAATCAGTCCCAGAGTAACAAACAGTTTTATTCACTACAGAGATGAAAACAGATAAATTACACActgtgagacagagaggaggcagggaggaggaggggctCAGTCTCTCACTGCTCCTCTGCTTCTATTGTTTTGTCTTCTCTCCGTTGGGCGGTATTGCTCGTCCTGTCCGTGCCCtgcctgtgtctcagtgtctccgCTCGTGCTGTCCGTGCCCGGCTTGTGTCCCCGGGAGGAATGTCCCTGCGGGATGGAGGGAGTCTTTCTTATCCTCATTGTGTCCTGATTTTTCTGTCATCCCTCCGTCAGTCAGTATTAATACACTGcactctccctccatctccctctccatctctcactcCTCCCATCCCTTGCCCCCGGGCTGGGCCGGGAGCCTGAAGCCCAGCATGGCGGCCGTGTCCCCCGCGTCCTGCTCCCCCCGCCTGTGGTAGAGGGAGTGGAGGGAGGAGTGCAGCCGGGAACTGGCCAGCAGAGAGAGGTAGGAGGAGGCAGTGTGCAGAGACTCCTGCTGGGCTCGACACAGCTTCTCACTggtCCTGGTTCTTCCGGAACTGCTCCAGGACATAACTGTAGGCGGGGGAGCGCTGGTAGTCCGGGCCTTTGAGCGCCCGGATCTCCTTCAGGATTCCTCGGCAGACCCGCAGCGGAGGAGCTAAAGACGCCATTTTGGATCTGGTTTCTAAAGAGAGCGAAGAAGTCGAGCGTCGAGGAGATCGAGCAAGCGAACAAAATGAGCAGAGGAGTCGATTTCCGAGCAATCAATTGACGCGGCGGCGAATATTTTCTAGAGCCGGAGACACCCAGGTGTGAGCAATCGATCGCGGAGAAGCGGAGCGCGATCCTCGATAGGGACGGAAAAAAGGAAGCAGCTGAATAGTTTCAATcgtttttctgtttctctttccttcGGGGCACTTTTTTCACGGCTTCATCTCCCTCTGTGTTTAAAACGTGAATTATTTTCAACGTTTTGTGTTACCtgaaatacacatgtacaccAGCTTCAATGCAAATCCCAATCGGTTAccacaacaataattataatgatgcaAATGATtgtaacaacaacagcaattgCAATAATAACAGAACGAATCCGAAGGGAAATGAACGAAATAAATCGTTTTTCGCTACTATTAGGATACTAATTGCTTTGGCTCTGCGGGTGCGGTGAGCGCTGGCGCATGCGCAGTGCCCCCCTGATGCGGCCCTGTTGTCCCTGCCAGCGGGTGCAGTTCGCCGCGCCGCCGCCAGAGGGAGACGCTGCCCTGCAGAACGGCGCCAGAGGCCGGAGCTGCAGTACCG

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93177 lncRNA upstream 23757 40101893 ~ 40138259 (+) True G74615
TU93093 lncRNA upstream 155362 39987502 ~ 40006654 (+) True G74557
TU93030 lncRNA upstream 321398 39796112 ~ 39840618 (+) True G74521
TU93025 lncRNA upstream 406352 39755390 ~ 39755664 (+) True G74516
TU93022 lncRNA upstream 409465 39752197 ~ 39752551 (+) True G74513
TU93222 lncRNA downstream 67620 40231617 ~ 40231881 (+) True G74647
TU93224 lncRNA downstream 68777 40232774 ~ 40233420 (+) True G74649
TU93234 lncRNA downstream 120904 40284901 ~ 40286138 (+) True G74656
TU93239 lncRNA downstream 139235 40303232 ~ 40379753 (+) True G74661
TU93251 lncRNA downstream 174218 40338215 ~ 40404638 (+) False AMCG00014940
AMCG00014932 mRNA upstream 10509 40147423 ~ 40151507 (+) True AMCG00014932
AMCG00014931 mRNA upstream 21607 40114128 ~ 40140409 (+) True AMCG00014931
AMCG00014929 mRNA upstream 171530 39985305 ~ 39990486 (+) True AMCG00014929
AMCG00014928 mRNA upstream 188946 39970263 ~ 39973070 (+) False AMCG00014928
AMCG00014925 mRNA upstream 208738 39951189 ~ 39953278 (+) True AMCG00014925
AMCG00014936 mRNA downstream 24712 40188709 ~ 40206799 (+) True AMCG00014936
AMCG00014939 mRNA downstream 46831 40210828 ~ 40211397 (+) True AMCG00014939
AMCG00014937 mRNA downstream 56475 40220472 ~ 40224003 (+) True AMCG00014937
AMCG00014943 mRNA downstream 160825 40324822 ~ 40330925 (+) True AMCG00014943
AMCG00014940 mRNA downstream 174245 40338242 ~ 40340289 (+) True AMCG00014940
TU93214 other upstream 1438 40159901 ~ 40160578 (+) True G74642
TU93084 other upstream 189605 39963768 ~ 39972411 (+) True AMCG00014928
TU93074 other upstream 208759 39951188 ~ 39953257 (+) False AMCG00014925
TU93040 other upstream 286588 39873140 ~ 39875428 (+) True AMCG00014923
TU93044 other upstream 290013 39865082 ~ 39872003 (+) False AMCG00014923
TU93243 other downstream 167990 40331987 ~ 40373863 (+) False AMCG00014942
TU93250 other downstream 174218 40338215 ~ 40340395 (+) False AMCG00014940
TU93241 other downstream 205140 40369137 ~ 40373863 (+) True AMCG00014942
TU93363 other downstream 330914 40494911 ~ 40530521 (+) False AMCG00014954
TU93411 other downstream 725977 40889974 ~ 40990904 (+) True G74803

Expression Profile