RNA id: TU93224



Basic Information


Item Value
RNA id TU93224
length 647
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G74649
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40232774 ~ 40233420 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tgtgtgtgtattccaGTGTATACCATTCTCTGTGTGGGTGGGTCTGTGTATACAACTTTGTCTCCAAGGAGATGTTTTGTGGTCCATTGCTCCGCCAGCCGGCCGGTGTGACTGTGGTCGCTATGACAACACAAGCCAGCACAGACACACCTGGACGCCACTGTCCAGCGACGCTCTTCCAAAAGCTCCACCGCctcaaacagacagacaaacaaaaaatagattCCCAACATTATACTCCAAACATCCCATTCCCAACATTCTTTTCCTGAATAAAAAATCGATTCCCAACATTCCAAACATTCGATTGCCAAAATTTCTATGCCCAACCTTCCATtccaaatctctctctctctctctctctctctctctctctctctctcatcatcCCTGCCTGTTGAAAGAGGTTGCCTGAGCAGGAGAGCAAAGCACATGTGAAGCTCCTCCTTAAATAAAGAAATCTCATAAAGAGTTCGATGGAcaagagagaaaacagaaaaagagaaatttcaatgcacacgcacacgcgcacGCCCAGATACAGAAGATTCGGTATTGTctaaatatatagatacacattAATGAAGTCatgtaaaattaacaaataaaaaacaaaacaaaaaaacaactacataatcataataata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU93222 lncRNA upstream 893 40231617 ~ 40231881 (+) True G74647
TU93177 lncRNA upstream 94515 40101893 ~ 40138259 (+) True G74615
TU93093 lncRNA upstream 226120 39987502 ~ 40006654 (+) True G74557
TU93030 lncRNA upstream 392156 39796112 ~ 39840618 (+) True G74521
TU93025 lncRNA upstream 477110 39755390 ~ 39755664 (+) True G74516
TU93234 lncRNA downstream 51481 40284901 ~ 40286138 (+) True G74656
TU93239 lncRNA downstream 69812 40303232 ~ 40379753 (+) True G74661
TU93251 lncRNA downstream 104795 40338215 ~ 40404638 (+) False AMCG00014940
TU93257 lncRNA downstream 109175 40342595 ~ 40349838 (+) True G74672
TU93269 lncRNA downstream 162878 40396298 ~ 40397074 (+) True G74683
AMCG00014937 mRNA upstream 8771 40220472 ~ 40224003 (+) True AMCG00014937
AMCG00014939 mRNA upstream 21377 40210828 ~ 40211397 (+) True AMCG00014939
AMCG00014936 mRNA upstream 25975 40188709 ~ 40206799 (+) True AMCG00014936
AMCG00014932 mRNA upstream 81267 40147423 ~ 40151507 (+) True AMCG00014932
AMCG00014931 mRNA upstream 92365 40114128 ~ 40140409 (+) True AMCG00014931
AMCG00014943 mRNA downstream 91402 40324822 ~ 40330925 (+) True AMCG00014943
AMCG00014940 mRNA downstream 104822 40338242 ~ 40340289 (+) True AMCG00014940
AMCG00014942 mRNA downstream 137973 40371393 ~ 40373870 (+) False AMCG00014942
AMCG00014941 mRNA downstream 148862 40382282 ~ 40385629 (+) True AMCG00014941
AMCG00014947 mRNA downstream 154486 40387906 ~ 40391206 (+) True AMCG00014947
TU93215 other upstream 68777 40162016 ~ 40163997 (+) True G74643
TU93214 other upstream 72196 40159901 ~ 40160578 (+) True G74642
TU93084 other upstream 260363 39963768 ~ 39972411 (+) True AMCG00014928
TU93074 other upstream 279517 39951188 ~ 39953257 (+) False AMCG00014925
TU93040 other upstream 357346 39873140 ~ 39875428 (+) True AMCG00014923
TU93243 other downstream 98567 40331987 ~ 40373863 (+) False AMCG00014942
TU93250 other downstream 104795 40338215 ~ 40340395 (+) False AMCG00014940
TU93241 other downstream 135717 40369137 ~ 40373863 (+) True AMCG00014942
TU93363 other downstream 261491 40494911 ~ 40530521 (+) False AMCG00014954
TU93411 other downstream 656554 40889974 ~ 40990904 (+) True G74803

Expression Profile