RNA id: TU93239


Basic Information

Item Value
RNA id TU93239
length 1455
lncRNA type read_through
GC content 0.52
exon number 3
gene id G74661
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40303232 ~ 40379753 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTGACCAGTATGTAGCAGTACTTGTACAGAGACGGTGCCCTGGTGCTGCTCTTGTACTGACAGCTCACGGTCCCAGTCCAGGAGCTGCTGTTCAGACCCAGCTGCACAGGGTGGGAGGTGTTGGTGGGCTGGGCGCCCGTGGCCGGCACCTGGATCGAGGGTAGCCGGGCGGGGCTGGGCGGTGGTCCGGCTCCGTGGGCGGCGGGGTGGTGTGAGCACTGCAGCGACCCGGAGCTGTGGTTCTGTGGCACGTAGACTGTGAACAAGAGCTGCAGCGTCTCCCCGACCAGCGCCACGCGAACCGGACTGCCCAGTAAGTGAACTGAGAcctgagcttctctgtctctttgcgtgtctccgtctctgtccctgtctctctcctccctgcGTCTTTCTCTCCTTGTCCCCCGCTCTACagagagacaggcagagacaggCGCACTACAGTCCctcacactggcacacagacGGGATGTGCGTTTGCCTGTGAGCTTTGCAgactgggctgtgagcacacgCTACACTGAGCTCAGCCCGTCTTCACTGTGCTTCTGCATTCGgacttaaaaacacaatttcctgAACTTTATTGAGAAGCTTGTTAAGAGCGCGGCCGGGCTGCATCTCCTCTGTGGCTCGGACCTCACTGGGTACAGgcggagaggaggagagagagagagaaggatagAGGGAGGGGAATCAGAGGGAGGTGCGGAGGTGTACTCAGTGTCACCAGGCCCatgggcagggagagagagagagagaggggaaaagagagagaaagagggatgagggagagagagggagaaagagggagaaagagggatgAGGAGGTGGTCTCACCTGGGCTGTGGGCAGGAAGCCGAGAGAGTCCAGAATGACCAATGAGTCAACCAGCTCAGGGAACACTGCGCTGaactacacaacaaaacaacacaattacacTTCGCTGaactacacaacaacacaattacacactgCGTTGaactacacaacaaaacaacacaattacacactgCGCTGAActacacaacaacacatttacactgtacacaacaacacaattacaCTTTGCTGaactacacaacaacacaattacacactgtGCTGaactacacaacaaaacaacacaattacacTGCGCTGAACTACTcaacaaaaaaattacacacTGCGCTGAACTactcaacaaaacaacacaattacacTGCGCTGaactacacaacaacacaattacaCTGCGCTGAACTACACAACACAATTACACTGCGCTGAACTACTCAACAACACAATTACACTGCGCTGaactacacaacaaaacaacacaattacacTTCGCTGaactacacaacaacacaattacacactgCGCTGaactacacaacaacacaattacaCTGTGCTGaactacacaacaaaacaacacaattacacTTCGCTGAACTACACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93234 lncRNA upstream 17094 40284901 ~ 40286138 (+) True G74656
TU93224 lncRNA upstream 69812 40232774 ~ 40233420 (+) True G74649
TU93222 lncRNA upstream 71351 40231617 ~ 40231881 (+) True G74647
TU93177 lncRNA upstream 164973 40101893 ~ 40138259 (+) True G74615
TU93093 lncRNA upstream 296578 39987502 ~ 40006654 (+) True G74557
TU93269 lncRNA downstream 16545 40396298 ~ 40397074 (+) True G74683
TU93276 lncRNA downstream 31128 40410881 ~ 40413637 (+) True G74690
TU93372 lncRNA downstream 109448 40489201 ~ 40491346 (+) True G74768
TU93374 lncRNA downstream 149961 40529714 ~ 40530310 (+) True G74769
TU93383 lncRNA downstream 266428 40646181 ~ 40646393 (+) True G74778
AMCG00014937 mRNA upstream 79229 40220472 ~ 40224003 (+) True AMCG00014937
AMCG00014939 mRNA upstream 91835 40210828 ~ 40211397 (+) True AMCG00014939
AMCG00014936 mRNA upstream 96433 40188709 ~ 40206799 (+) True AMCG00014936
AMCG00014932 mRNA upstream 151725 40147423 ~ 40151507 (+) True AMCG00014932
AMCG00014931 mRNA upstream 162823 40114128 ~ 40140409 (+) True AMCG00014931
AMCG00014941 mRNA downstream 2529 40382282 ~ 40385629 (+) True AMCG00014941
AMCG00014947 mRNA downstream 8153 40387906 ~ 40391206 (+) True AMCG00014947
AMCG00014948 mRNA downstream 39821 40419574 ~ 40437283 (+) True AMCG00014948
AMCG00014954 mRNA downstream 150639 40530392 ~ 40532273 (+) True AMCG00014954
AMCG00014956 mRNA downstream 348049 40727802 ~ 40729957 (+) True AMCG00014956
TU93215 other upstream 139235 40162016 ~ 40163997 (+) True G74643
TU93214 other upstream 142654 40159901 ~ 40160578 (+) True G74642
TU93084 other upstream 330821 39963768 ~ 39972411 (+) True AMCG00014928
TU93074 other upstream 349975 39951188 ~ 39953257 (+) False AMCG00014925
TU93040 other upstream 427804 39873140 ~ 39875428 (+) True AMCG00014923
TU93363 other downstream 115158 40494911 ~ 40530521 (+) False AMCG00014954
TU93411 other downstream 510221 40889974 ~ 40990904 (+) True G74803
TU93556 other downstream 710022 41089775 ~ 41090612 (+) True G74925
TU93587 other downstream 834197 41213950 ~ 41215242 (+) True G74952
TU93640 other downstream 954790 41334543 ~ 41335049 (+) False AMCG00014963

Expression Profile