RNA id: TU93330


Basic Information

Item Value
RNA id TU93330
length 1621
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G74738
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40365960 ~ 40368045 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGTCAGCGGCCGGCCGGAGCTGCATCTGCGACGAGGAGACAGCGCTAGATTCAGTGACCgattcaaaataatcataatcataatgcAAATGATAATCATAAAGTCGTCTTTCATTTTTGAATAAATGCTATTAACAAAGCACAACGTCTATCGGGAATATTGTTCttcttgtaattattattagagCTTCTGCGCTATGACTGTTTCCTAATGATCTGTGCATGTGAGAGAGTCTGTGAAGCGGAGACGTGCACAGATCCagcggacagacagacagacagacacagggatGCCGGCGCCTCGTCATCACTAGGactggCCTGTCCCTTGTGTCTCTCCGTGCTGTGAGGGGTACAGAGGACTGGACTCTGCTGACTGCAGTAACCTTCTCTGGCTACAAGGAGCCCCTGTTTCTGAAGCCCTCAGACCCATCCCTCTATAGctaTGTCCCATTTCCTGGAGTGGTTTGTGCCAGTGTACCTGCTGGTGTCagtgctggtgctgctgggcTTTggtgcctgcatctactactgTGAGCCAGGGCTGCAGGAGGCGCACAAGTGGAGTACGCAGCGCCGCCTGGTGGGCCGGGGGAGGAACTGCAAGACACTACTGGCTCAAGATAACCTGGGCTACAGAGAGCCCGAGGTGTGAGAGTCAGACTGAGACAGGGGAAGAGGGATagaggtggagagagggagaaagggtgTAGTACAGAAAAGCAGtattcactgactgactgacagacttacACAatgactaactgactgacagacacactgactgactaactgatacactgactgactgactgacacactgactgatatactgactgattgacacactgactgatatactgactgattgacacactgactgactgattgacacactgactgactgactgacacacatacacactgactgactgactgatacactgactgactggacacgtCCGCATATTAATACTGCCCTGAGACGGAGAGAGATAGATAGTGGAAGGGAGAGACAAAGAAAggtggaaagagaaagagaatgagagatagatagatagatagaacacaataataataataataataataataataatgtaaataaaaacttgtgccaaaaagagacagacagagggagacagagagagagagacagcaacaGAGAAAGGCTGGAGCACAGGAGATAGTATTCAGACAGTattccccatctctctctctcttggaaACTTGAGTATGGACTAAgccatttaaaacacaacaataacaacgataataataacgataataataataatgccaaatATTTACCTGTCTGTCATATGAAGATGTCAGGATGGATTCATTAAGCAATTACAGAACCAATTAAAGAATTAGCTGCCATAGCAACCAGGAGCCCCACTGTTCTTGGTGTGCGAGTGTTTTTCAGACCAAACAAACCAATTGCCAAACTCTCCATTTCAaactattgtgtgtgttttcttactGCGTCGTGTACGCACAGCtctgtatgtcagtgtgttgaGAGTGAGTGCATCGGCCCTCATCAGCACAAAGTGTATAAGGAGCAGGCATTGCGGTGTTCTGgccaattaataaaacatgatattaaaataaa

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93328 lncRNA downstream 5735 40338064 ~ 40360225 (-) False G74736
TU93327 lncRNA downstream 25565 40338064 ~ 40340395 (-) True G74736
TU93315 lncRNA downstream 66781 40296861 ~ 40299179 (-) True G74725
TU93190 lncRNA downstream 226859 40101893 ~ 40139101 (-) True G74625
TU93199 lncRNA downstream 236594 40128921 ~ 40129366 (-) True G74633
TU93465 lncRNA upstream 67395 40435440 ~ 40435670 (-) True G74845
TU93475 lncRNA upstream 278137 40646182 ~ 40646384 (-) True G74854
TU93481 lncRNA upstream 327942 40695987 ~ 40696241 (-) True G74860
TU93485 lncRNA upstream 335866 40703911 ~ 40704607 (-) True G74864
TU93496 lncRNA upstream 453649 40821694 ~ 40822155 (-) True G74875
AMCG00014944 mRNA downstream 6258 40348222 ~ 40359702 (-) True AMCG00014944
AMCG00014945 mRNA downstream 50022 40308887 ~ 40315938 (-) True AMCG00014945
AMCG00014946 mRNA downstream 73391 40281194 ~ 40292569 (-) True AMCG00014946
AMCG00014938 mRNA downstream 97475 40235058 ~ 40268485 (-) True AMCG00014938
AMCG00014934 mRNA downstream 201380 40162386 ~ 40164580 (-) True AMCG00014934
AMCG00014952 mRNA upstream 26458 40394503 ~ 40398556 (-) True AMCG00014952
AMCG00014951 mRNA upstream 34721 40402766 ~ 40410777 (-) True AMCG00014951
AMCG00014953 mRNA upstream 42829 40410874 ~ 40416728 (-) True AMCG00014953
AMCG00014950 mRNA upstream 61337 40429382 ~ 40431042 (-) True AMCG00014950
AMCG00014949 mRNA upstream 69214 40437259 ~ 40438149 (-) True AMCG00014949
TU93316 other downstream 61875 40303231 ~ 40304085 (-) True G74726
TU93314 other downstream 71434 40292156 ~ 40294526 (-) False AMCG00014946
TU93302 other downstream 129165 40236402 ~ 40236795 (-) False AMCG00014938
TU93152 other downstream 353879 39984694 ~ 40012081 (-) False G74593
TU93146 other downstream 414890 39944730 ~ 39951070 (-) True G74591
TU93349 other upstream 33738 40401783 ~ 40405328 (-) False AMCG00014951
TU93466 other upstream 69294 40437339 ~ 40534709 (-) False AMCG00014949
TU93483 other upstream 329808 40697853 ~ 40698276 (-) True G74862
TU93491 other upstream 414795 40782840 ~ 40783230 (-) True G74870
TU93508 other upstream 538336 40906381 ~ 40909386 (-) False AMCG00014958

Expression Profile