RNA id: TU93411



Basic Information


Item Value
RNA id TU93411
length 573
RNA type TUCP
GC content 0.58
exon number 3
gene id G74803
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40889974 ~ 40990904 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ttttttttttttaaGTAGGAACTATTTATTCAGGCCAGATTTGCCGTACAATTGTTTACAAAGGCCCGAGaacaaaacactgaacatgAGCTTGTCTATCGCCGGCATGAAAAGACTCCTGGGCAGGcctctgctgattggctgttcaCAGGTTGTTGTTGCTCCACTCGGACAGGGCCTGGTGGGACCGAGCGGCCTGACTCTTGTTGGCCCCACAGGTGTCCTTCATCCACTGGGTGAACTTCTCCTCACTGCCGCCATTCTGCAGGTAGGCAACGGACACATGCGAGGGATGCTGGGTGCTGCGCTGGCGGGTACGAGCCCCGTGCTGTACCTGGGAGTATTGCTTGGTCTCCAGCCTGCGGCCCAGCGTGTCCCCGACCCCGGGCACGGCGCGCACGGACTTGTTGAGCATGGGCTCGGACACGAAGCTGGAGTACTTCTTGGATGTGGAGCTCATTGCGGCTGCGCGGCTCGATTTCTGCTGTGCAAATACAAGCCAAAACCCAGACTCGTCAGCTGCTGCGGTCCCGGCCCCACAGAGCCTCCCTCCCCGGCCTCTCAGAGCCTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU93405 lncRNA upstream 15490 40874103 ~ 40874484 (+) True G74800
TU93404 lncRNA upstream 17961 40871762 ~ 40872013 (+) True G74799
TU93403 lncRNA upstream 20869 40868887 ~ 40869105 (+) True G74798
TU93396 lncRNA upstream 68517 40821238 ~ 40821457 (+) True G74791
TU93391 lncRNA upstream 106744 40782840 ~ 40783230 (+) True G74786
TU93539 lncRNA downstream 51160 41042064 ~ 41043557 (+) True G74909
TU93540 lncRNA downstream 51160 41042064 ~ 41043557 (+) False G74909
TU93574 lncRNA downstream 177172 41168076 ~ 41168353 (+) True G74942
TU93576 lncRNA downstream 178307 41169211 ~ 41169612 (+) True G74944
TU93612 lncRNA downstream 275415 41266319 ~ 41267002 (+) True G74973
AMCG00014955 mRNA upstream 130064 40745696 ~ 40759910 (+) True AMCG00014955
AMCG00014956 mRNA upstream 160017 40727802 ~ 40729957 (+) True AMCG00014956
AMCG00014954 mRNA upstream 357701 40530392 ~ 40532273 (+) True AMCG00014954
AMCG00014948 mRNA upstream 452691 40419574 ~ 40437283 (+) True AMCG00014948
AMCG00014947 mRNA upstream 498768 40387906 ~ 40391206 (+) True AMCG00014947
AMCG00014961 mRNA downstream 24964 41015868 ~ 41035772 (+) True AMCG00014961
AMCG00014960 mRNA downstream 46126 41037030 ~ 41041391 (+) True AMCG00014960
AMCG00014966 mRNA downstream 312904 41303808 ~ 41312018 (+) True AMCG00014966
AMCG00014963 mRNA downstream 343582 41334486 ~ 41340160 (+) True AMCG00014963
AMCG00014965 mRNA downstream 372253 41363157 ~ 41364542 (+) True AMCG00014965
TU93363 other upstream 359453 40494911 ~ 40530521 (+) False AMCG00014954
TU93243 other upstream 516111 40331987 ~ 40373863 (+) False AMCG00014942
TU93241 other upstream 516111 40369137 ~ 40373863 (+) True AMCG00014942
TU93250 other upstream 549579 40338215 ~ 40340395 (+) False AMCG00014940
TU93215 other upstream 725977 40162016 ~ 40163997 (+) True G74643
TU93556 other downstream 98871 41089775 ~ 41090612 (+) True G74925
TU93587 other downstream 223046 41213950 ~ 41215242 (+) True G74952
TU93640 other downstream 343639 41334543 ~ 41335049 (+) False AMCG00014963
TU93651 other downstream 402600 41393504 ~ 41405025 (+) True AMCG00014968
TU93693 other downstream 427779 41418683 ~ 41421316 (+) False AMCG00014970

Expression Profile