RNA id: TU93516


Basic Information

Item Value
RNA id TU93516
length 819
RNA type TUCP
GC content 0.66
exon number 2
gene id G74890
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40931797 ~ 40933954 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttctttttccACAGCGACGTGAAGTCAGTGTGCAGGCTGTGTAGACTGGGCGGCGGGATCGCCATTATTTACCCACAGAGACAGAGGACAAGCCGGCGCTGAAACAGGCTGAGAAATGAACCCTGCCGATTCAGagaagagagaggaggaagagcaggaaaTGGATGCGGTCGAGGAGCAGGGAGAGGCCGACGGAGAGGGGGAGCTGAGGCTAGTGCTGCTGGGGAAGACGGGAGCGGGGAAGAGCGCGTCCGGGAACACCATCCTGGGCCGGAGAGGGTTCCGCTCGGAGCCCAGCTACTGCTCGGTGACACGGCTGTGCGAGAAGAGGCGAGGGGAGGTGGTGGCAGGTGCAACCAGCGGAGGGGGGGAGGAGCGGCGAGGGCGCAGAGTGGCGGTGGTGGACATGCCGGGGCTGTGCGACACACAGCTGTCCCCCGAGGAGCTGCGAGCTGAGATCGCCAAGTGTGTGGCCCTGAGCGCCCCGGGGCCCCACGCCTTCCTGCTGGTGGTGCCCGTGGGCCgcttcacagaggaggaggcCAGAGTGGCGGGGGCTATCGAGGGGATCTTCGGGGCACAGGCGGCTGCCTACACACTGGTCCTTTTCACCCGTGGGGACGACCTGGAGGGCCTGGCGCTGGAGGGGTTCTTGAGGGAGACGGCCCCCCCGGGACTGCAGGCGCTGCTGGGAAGGTGTGGGGGCCGGTACCACCTGTTCAATAACCGGGATGCGGGAGACAGGGGGCAGgtggaggagctgctggagaagaTTGACAGGATGGTGGAGGGCAACGGGGGCGGCTGCTACACCAGC

Function

GO:

id name namespace
GO:0048570 notochord morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93504 lncRNA downstream 49374 40882192 ~ 40882423 (-) True G74882
TU93502 lncRNA downstream 59803 40871763 ~ 40871994 (-) True G74880
TU93496 lncRNA downstream 109642 40821694 ~ 40822155 (-) True G74875
TU93485 lncRNA downstream 227190 40703911 ~ 40704607 (-) True G74864
TU93481 lncRNA downstream 235556 40695987 ~ 40696241 (-) True G74860
TU93534 lncRNA upstream 65899 40999853 ~ 41000652 (-) True G74905
TU93541 lncRNA upstream 108144 41042098 ~ 41043583 (-) True G74910
TU93582 lncRNA upstream 277085 41211039 ~ 41211311 (-) True G74950
TU93609 lncRNA upstream 328814 41262768 ~ 41263907 (-) True G74970
TU93617 lncRNA upstream 335973 41269927 ~ 41270183 (-) True G74978
AMCG00014959 mRNA downstream 8931 40912194 ~ 40922866 (-) True AMCG00014959
AMCG00014958 mRNA downstream 22346 40906225 ~ 40909451 (-) True AMCG00014958
AMCG00014957 mRNA downstream 33097 40886015 ~ 40898700 (-) True AMCG00014957
AMCG00014949 mRNA downstream 493648 40437259 ~ 40438149 (-) True AMCG00014949
AMCG00014950 mRNA downstream 500755 40429382 ~ 40431042 (-) True AMCG00014950
AMCG00014962 mRNA upstream 55718 40989672 ~ 40990791 (-) True AMCG00014962
AMCG00014967 mRNA upstream 243930 41177884 ~ 41226807 (-) True AMCG00014967
AMCG00014964 mRNA upstream 396484 41330438 ~ 41331770 (-) False AMCG00014964
AMCG00014972 mRNA upstream 479458 41413412 ~ 41416011 (-) True AMCG00014972
AMCG00014974 mRNA upstream 487907 41421861 ~ 41435628 (-) True AMCG00014974
TU93511 other downstream 6360 40922964 ~ 40925437 (-) True G74887
TU93508 other downstream 22411 40906381 ~ 40909386 (-) False AMCG00014958
TU93491 other downstream 148567 40782840 ~ 40783230 (-) True G74870
TU93483 other downstream 233521 40697853 ~ 40698276 (-) True G74862
TU93466 other downstream 397088 40437339 ~ 40534709 (-) False AMCG00014949
TU93577 other upstream 235087 41169041 ~ 41169551 (-) True G74945
TU93668 other upstream 395359 41329313 ~ 41331666 (-) True AMCG00014964
TU93726 other upstream 536340 41470294 ~ 41472194 (-) True AMCG00014971
TU93975 other upstream 1185333 42119287 ~ 42131232 (-) True G75272
TU94096 other upstream 1357967 42291921 ~ 42292295 (-) True G75370

Expression Profile