RNA id: TU93577


Basic Information

Item Value
RNA id TU93577
length 511
RNA type TUCP
GC content 0.62
exon number 1
gene id G74945
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41169041 ~ 41169551 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acagggttgtcccctgtcggccctgctgtacgtcctctgtctggagccgttcatgcaggcgatccgccgggacgtccgggtgacaggtttccatctcccgagttccggcggagagcaactgaaagccctggcctatatggacgacGTGGCCGTGGTCTGCACGGACGCGCCGTCCgtggccagggttgaggaactgctggacggcttctgcagggcgacgggggccgctgtcaatagggccaagagcgaggtctacctctccagagcatggcctgtcggccggggcccgccgaccgtgttccctgtgaagccgtccatcacggttctggggatcacgatcgacgggaccaacacaGGCACCCGGAGCTGCGAGGAAGCCTTTTCTAAGGTCCAAAgaaagatccacggctggagcacaaggaccttgacgatggccggtaaggtgctggtcgtaaaggccatcctcttcccaaTACTCCTCTACGTAGGaatgatcttccccccagacaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93541 lncRNA downstream 125458 41042098 ~ 41043583 (-) True G74910
TU93534 lncRNA downstream 168389 40999853 ~ 41000652 (-) True G74905
TU93504 lncRNA downstream 286618 40882192 ~ 40882423 (-) True G74882
TU93502 lncRNA downstream 297047 40871763 ~ 40871994 (-) True G74880
TU93496 lncRNA downstream 346886 40821694 ~ 40822155 (-) True G74875
TU93582 lncRNA upstream 41488 41211039 ~ 41211311 (-) True G74950
TU93609 lncRNA upstream 93217 41262768 ~ 41263907 (-) True G74970
TU93617 lncRNA upstream 100376 41269927 ~ 41270183 (-) True G74978
TU93682 lncRNA upstream 235911 41405462 ~ 41405799 (-) True G75032
TU93685 lncRNA upstream 237366 41406917 ~ 41409612 (-) True G75035
AMCG00014962 mRNA downstream 178250 40989672 ~ 40990791 (-) True AMCG00014962
AMCG00014959 mRNA downstream 246175 40912194 ~ 40922866 (-) True AMCG00014959
AMCG00014958 mRNA downstream 259590 40906225 ~ 40909451 (-) True AMCG00014958
AMCG00014957 mRNA downstream 270341 40886015 ~ 40898700 (-) True AMCG00014957
AMCG00014949 mRNA downstream 730892 40437259 ~ 40438149 (-) True AMCG00014949
AMCG00014967 mRNA upstream 8333 41177884 ~ 41226807 (-) True AMCG00014967
AMCG00014964 mRNA upstream 160887 41330438 ~ 41331770 (-) False AMCG00014964
AMCG00014972 mRNA upstream 243861 41413412 ~ 41416011 (-) True AMCG00014972
AMCG00014974 mRNA upstream 252310 41421861 ~ 41435628 (-) True AMCG00014974
AMCG00014973 mRNA upstream 282892 41452443 ~ 41460863 (-) True AMCG00014973
TU93516 other downstream 235087 40931797 ~ 40933954 (-) True G74890
TU93511 other downstream 243604 40922964 ~ 40925437 (-) True G74887
TU93508 other downstream 259655 40906381 ~ 40909386 (-) False AMCG00014958
TU93491 other downstream 385811 40782840 ~ 40783230 (-) True G74870
TU93483 other downstream 470765 40697853 ~ 40698276 (-) True G74862
TU93668 other upstream 159762 41329313 ~ 41331666 (-) True AMCG00014964
TU93726 other upstream 300743 41470294 ~ 41472194 (-) True AMCG00014971
TU93975 other upstream 949736 42119287 ~ 42131232 (-) True G75272
TU94096 other upstream 1122370 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 1339318 42508869 ~ 42513574 (-) False AMCG00015031

Expression Profile