RNA id: TU93685


Basic Information

Item Value
RNA id TU93685
length 2696
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G75035
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41406917 ~ 41409612 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCATAGAAAAAAGACAGAATACATCTTTATTTAGTGTGAGAGACATTAATAACAATCTCAGAGTGGCTACGGTTTCCATACAATTCAGAATTACATGTGCAGTTTGTCTTgcgtttgtctgtttttttagcCAACAATAGAAACTggaaatggcaaaataataataataaaataataataaaataaataaaacaaatgcgaCCAGAAACACGTGCGACTGTGACGCATGTTGGAATGACTGATCACAGCAgataaaaactgtttttgtttgtttgtttgcttcagaatataaaataactttaatatataataacaataataatcataataacagtaataacaatgAGAATTATAAGAATAcctactatatattttttatgcaagaaagaaaaaacatagaGAGAAATAggaaaattcaaaaacattttgaacatttgggacatttttgtattcatgtatttatttatttcaaggaaGAATAATTATGGGAAATAGTTTGTAATTTGGATTAGAAGTGGAGAGGAACCTCCAATATGTGttaataaagacacacacacacacacacacacacacacacacacagaggcataTAATGACAATGTTCACATTGGGAGGGACCAGAGTTGGATTAGCAGGTGGACAAGTCAATAGGATTACAGAGGGGGTTTGGGTTGGCTTTTGATTTGTCCGTTTGGCATTTGACTTGTTTTAATGGCGAGGGGGACTGCAGCCCTGCTGTTCATTAACTGattgtgtaaataattaattagctAAGTAATTCATTCTGGACCAGGATGTAAATGGTACCTATAGCATGTTTGATTGGATCATTTTCCAAATATGGGCGTTTCTAGGTCATTTGGTGTTGTCAGGCTGCTGAAATTATACGCTCGGGTTTACAGGgataaactgtttaaaaatgtccattTAAAAACGCTCTCCAAACACATATGATTCAATAAAAGTAATTGATGAGGTTTAGCCAagctgttctctctctctctctctctctctctctctctctctctctctctctctcctacaaCTGCTATTCTCACTCCCTTGGCAGTCATAGCTGTgcccccactccccccccaaCAAGACtgcaaaatggtaaaaaaaaatacaattaaaaaacaaagaaaaagtcacACAATCGCACAAAACATCATACAACTTCATAATTATTAGAGACCAAACTGATATTTAACACAACATatgtacaatacaaaaacaaaatacagcgacaacaacaatacagaccaaaacaataataaaataagctaATACATTGTACACACAAGTGTTACTGTAACACAAGCAGTGGTGAAGACTTTCAGTGTAATGGAGACAAataacataacaacaataataataataataataacaataatagatacattgttttcttttcagacaAAACAGGAAAGAAATAGCCTTCATTTTggttattaataaatcaataataataatgataaaaaaagatatatatatttatgtatttaaaacaaaaatggatttTATACACAATCTCTGAGGGTGTCGTGTGTGACCTCCTCACATGCGACCTTTGACCTGCGCAGCCGTGAGCGGAGAGTCGCGGTTACGGCCCGGTCAGCGCCGACGCTCCCACCCTGACCTACACACAGTCTGTGTCAGGAGGTCGGAGACTGAGGCTGTGCATGTGGTCAGATCCCAGGTCCCGAGGCTAAGGTACAGACTCTGAGCTTAGTCCTCAACACGTGATCTCTATAGACAGATTCTATAGCACAGACTATAGCAAAAATCCTGGATAAGCGCACAGGTTCGCACTGAGACCACTTACACCTACAGCTCTCTATAGCGATGCATCGTAGGAGTCCTTCAGTGTCTCTACAGCCGCTCCGACACTGAAGCGCTGGCTCTGCACAGCCACACAGCACGCCTGCACCCAGAGGTGTGTAGTGAGCCCCTTGTGTGtgaacacgtgtgtgtgtgtttgtgtctgtcagtgtcactttgtgtgtgtgtgtgtgcttgcatctgtgagagaaagtgtgagtttgtgtctgtgtgtgcttgtgtatgtgtgagtctGAGTGTGACcgtttgtgtatgtgtctgtgtgagagtgagaggaatatatgtgtgtttgtaggtATGAGTGTGAGAGCCGTGTTTTGtatgagtgagagagtgtggaCTTGAGCCTATGCCCACTGCATCCCTCCAGCCTGGCCTGCGGTGAGTTTGGTGAAGTTCATGCAGTAGGATCGGAGAGAGCGTTGCGTTCTGCTCATGCTGGGGTAttaacgacaacaacaacaaaaacaataacaataataaaagagcTGGATTATACTGCCACACTGTAGAGGCTCAGTCCTCCCCCGGCCCTGTGTCCCAAACTGAAATTTCCACCCGTGTTTTCTTCTcaacaattaagtaatttcagACTACTGTCCTTTCCTTATGTCTATGTGTCCTGTCGGCCCCTGGGCTGCCCCTGTGTGTCAATTGCTGTGACCTGTCCTGTTCATCCCATCGGTGTCGTTAAATGCGTTCTGCACTGTCCTGTATTataagtgtatttaaatgtgcacaACAGGGAAGCTGAATAGCACTATCTGTCTGTCGGCAAATCCCTGGTGGCCTTGGCTGTTGTGCCAGTGAGAGTTCAGACATTGTCCTAACTGAGATTATACTGGATTATACT

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93682 lncRNA downstream 1118 41405462 ~ 41405799 (-) True G75032
TU93617 lncRNA downstream 136734 41269927 ~ 41270183 (-) True G74978
TU93609 lncRNA downstream 143010 41262768 ~ 41263907 (-) True G74970
TU93582 lncRNA downstream 195606 41211039 ~ 41211311 (-) True G74950
TU93541 lncRNA downstream 363334 41042098 ~ 41043583 (-) True G74910
TU93716 lncRNA upstream 40478 41450090 ~ 41451333 (-) True G75064
TU93744 lncRNA upstream 143845 41553457 ~ 41554704 (-) False AMCG00014978
TU93821 lncRNA upstream 241724 41651336 ~ 41673042 (-) True G75145
TU93820 lncRNA upstream 260544 41670156 ~ 41672310 (-) True G75144
TU93838 lncRNA upstream 355920 41765532 ~ 41766815 (-) False AMCG00014981
AMCG00014964 mRNA downstream 75147 41330438 ~ 41331770 (-) False AMCG00014964
AMCG00014967 mRNA downstream 180110 41177884 ~ 41226807 (-) True AMCG00014967
AMCG00014962 mRNA downstream 416126 40989672 ~ 40990791 (-) True AMCG00014962
AMCG00014959 mRNA downstream 484051 40912194 ~ 40922866 (-) True AMCG00014959
AMCG00014958 mRNA downstream 497466 40906225 ~ 40909451 (-) True AMCG00014958
AMCG00014972 mRNA upstream 3800 41413412 ~ 41416011 (-) True AMCG00014972
AMCG00014974 mRNA upstream 12249 41421861 ~ 41435628 (-) True AMCG00014974
AMCG00014973 mRNA upstream 42831 41452443 ~ 41460863 (-) True AMCG00014973
AMCG00014975 mRNA upstream 53982 41463594 ~ 41469552 (-) True AMCG00014975
AMCG00014971 mRNA upstream 61202 41470814 ~ 41474481 (-) False AMCG00014971
TU93668 other downstream 75251 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 237366 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 472963 40931797 ~ 40933954 (-) True G74890
TU93511 other downstream 481480 40922964 ~ 40925437 (-) True G74887
TU93508 other downstream 497531 40906381 ~ 40909386 (-) False AMCG00014958
TU93726 other upstream 60682 41470294 ~ 41472194 (-) True AMCG00014971
TU93975 other upstream 709675 42119287 ~ 42131232 (-) True G75272
TU94096 other upstream 882309 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 1099257 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 1114107 42523719 ~ 42534278 (-) False AMCG00015028

Expression Profile