RNA id: TU93700



Basic Information


Item Value
RNA id TU93700
length 1234
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G75049
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41450100 ~ 41451333 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTTTTATTTAaacctgaaaagaaaatgtctccATACTGtatcaaaaacagacatttagttttataatttCAACTACACAGAAAATTAACATTCTCCTTCTTTTCAACTGCTCAGGAGAAGACTACAAACAAGAACAGatgagcaagagagagagagggaggggagccAGGCAGAGTGGGGGTCTCCCGCAGTGAGTTCGGGGGTCTGTCCCACAATGCAGCTCAGCTGTACACTGTTTGTCTCGCAGCCCTGTACTGTGAACTGTACTACAATCACAACAGAGATCAGACCCTCACAGGCTACTATTGTCCTGAAGCCCAGGAGGCCGAGCCTCTCATCCCCGCCTGCTCTCCTGAAGGAAAGGGATTACACGCGTCTGGGCTGTGTACAAAACAACACTGATAACTGATACTTTACGGCTCACATGACTGCTCTCCTATACGCACCAACAAAATACTctcattgaaaatatttaaaaaaagacaataaccAAAGCAAACAGCTCCTTACCTCTGAATCAGAAAAGCTACAAGCAAAACTAAGCAACTAGATCCTTCACTAGTGAATCCCATGGCCTGTAACAGCACTGCCAGCCCTCTGAACTgaacagcaatacaaatctGAACATGAATCATCCCAACACTTAAACTCATTCAAGCCGATCAGCACTGAGCAGCACGGCGCTGGCTGTGACCGGCAGGGCAGGAGCAGCGCAGACACTCCAGTGAAATGAAGCAAAGGGAAAAGAAGTATATATACTTATGTACAATTTAATTCACATGTGACGGTGGAAGTTCTTTGGCTGCTGaagtgggattttttttttttttgcaggaggGTAAAAAACTCTGCTGTAACtaggtgtgggggggggctggtTAATCAACATTTCACATATctgacttaaaaaaacaaaaacaaacagcaattcagGAGATTTCAGAACTGGCCACATGACCAGGCCCTGCCCCCACATCTCCTGCAGCTGTGATCTCCAGCCTGCAGTTCCCCCCTGGGCTCTGTCTCAGCACAGTGCAGGAGGGTAAGGTGAGTGGGGGGGCaggagggagaaggaaaaaacaccCTTTCACGTTAACAAGCAACTGCTCTGGATTCACCAAGtccagacagagagaaagagaaaaagaaagaaagaaagggggtgagaggaaaaaaaagaggacTGTGTACTGGCTTCACTTCCTgggtggagggggaggtggtgggggcggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU93619 lncRNA upstream 177002 41271764 ~ 41273098 (+) True G74980
TU93616 lncRNA upstream 179632 41269927 ~ 41270468 (+) True G74977
TU93612 lncRNA upstream 183098 41266319 ~ 41267002 (+) True G74973
TU93576 lncRNA upstream 280488 41169211 ~ 41169612 (+) True G74944
TU93574 lncRNA upstream 281747 41168076 ~ 41168353 (+) True G74942
TU93760 lncRNA downstream 210821 41662154 ~ 41665444 (+) True G75099
TU93762 lncRNA downstream 210821 41662154 ~ 41663074 (+) False G75099
TU93786 lncRNA downstream 250288 41701621 ~ 41785740 (+) True G75115
TU93788 lncRNA downstream 253115 41704448 ~ 41705102 (+) True G75117
TU93807 lncRNA downstream 321563 41772896 ~ 41774135 (+) False AMCG00014980
AMCG00014969 mRNA upstream 264 41437580 ~ 41449836 (+) True AMCG00014969
AMCG00014970 mRNA upstream 27844 41418653 ~ 41422256 (+) True AMCG00014970
AMCG00014968 mRNA upstream 44348 41400537 ~ 41405752 (+) False AMCG00014968
AMCG00014965 mRNA upstream 85558 41363157 ~ 41364542 (+) True AMCG00014965
AMCG00014963 mRNA upstream 109940 41334486 ~ 41340160 (+) True AMCG00014963
AMCG00014976 mRNA downstream 84779 41536112 ~ 41551039 (+) True AMCG00014976
AMCG00014979 mRNA downstream 215445 41666778 ~ 41670067 (+) True AMCG00014979
AMCG00014980 mRNA downstream 319539 41770872 ~ 41774125 (+) True AMCG00014980
AMCG00014986 mRNA downstream 359838 41811171 ~ 41813199 (+) True AMCG00014986
AMCG00014995 mRNA downstream 481185 41932518 ~ 41934438 (+) True AMCG00014995
TU93693 other upstream 28784 41418683 ~ 41421316 (+) False AMCG00014970
TU93651 other upstream 45075 41393504 ~ 41405025 (+) True AMCG00014968
TU93640 other upstream 115051 41334543 ~ 41335049 (+) False AMCG00014963
TU93587 other upstream 234858 41213950 ~ 41215242 (+) True G74952
TU93556 other upstream 359488 41089775 ~ 41090612 (+) True G74925
TU93703 other downstream 1110 41452443 ~ 41457150 (+) True G75052
TU93723 other downstream 19880 41471213 ~ 41482573 (+) True G75067
TU93915 other downstream 646535 42097868 ~ 42100480 (+) True AMCG00015004
TU93993 other downstream 767547 42218880 ~ 42222095 (+) True AMCG00015014
TU94007 other downstream 938536 42389869 ~ 42405188 (+) True G75295

Expression Profile