RNA id: TU93716


Basic Information

Item Value
RNA id TU93716
length 1244
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G75064
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41450090 ~ 41451333 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccgcccccaccacctccccctccacccAGGAAGTGAAGCCAGTACACAgtcctcttttttttcctctcaccccctttctttctttctttttctctttctctctgtctggaCTTGGTGAATCCAGAGCAGTTGCTTGTTAACGTGAAAGggtgttttttccttctccctcctGCCCCCCCACTCACCTTACCCTCCTGCACTGTGCTGAGACAGAGCCCAGGGGGGAACTGCAGGCTGGAGATCACAGCTGCAGGAGATGTGGGGGCAGGGCCTGGTCATGTGGCCAGTTCTGAAATCTCctgaattgctgtttgtttttgtttttttaagtcagATATGTGAAATGTTGATTAaccagcccccccccacacctaGTTACAGCAGAGTTTTTTACcctcctgcaaaaaaaaaaaaaatcccacttCAGCAGCCAAAGAACTTCCACCGTCACATGTGAATTAAATTGTACATAAGTATATATACTTCTTTTCCCTTTGCTTCATTTCACTGGAGTGTCTGCGCTGCTCCTGCCCTGCCGGTCACAGCCAGCGCCGTGCTGCTCAGTGCTGATCGGCTTGAATGAGTTTAAGTGTTGGGATGATTCATGTTCagatttgtattgctgttcAGTTCAGAGGGCTGGCAGTGCTGTTACAGGCCATGGGATTCACTAGTGAAGGATCTAGTTGCTTAGTTTTGCTTGTAGCTTTTCTGATTCAGAGGTAAGGAGCTGTTTGCTTTggttattgtctttttttaaatattttcaatgagAGTATTTTGTTGGTGCGTATAGGAGAGCAGTCATGTGAGCCGTAAAGTATCAGTTATCAGTGTTGTTTTGTACACAGCCCAGACGCGTGTAATCCCTTTCCTTCAGGAGAGCAGGCGGGGATGAGAGGCTCGGCCTCCTGGGCTTCAGGACAATAGTAGCCTGTGAGGGTCTGATCTCTGTTGTGATTGTAGTACAGTTCACAGTACAGGGCTGCGAGACAAACAGTGTACAGCTGAGCTGCATTGTGGGACAGACCCCCGAACTCACTGCGGGAGACCCCCACTCTGCCTggctcccctccctctctctctcttgctcatCTGTTCTTGTTTGTAGTCTTCTCCTGAGCAGTTGAAAAGAAGGAGAATGTTAATTTTCTGTGTAGTTGaaattataaaactaaatgtctgtttttgataCAGTATggagacattttcttttcaggttTAAATAAAAGATTTGACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93685 lncRNA downstream 40478 41406917 ~ 41409612 (-) True G75035
TU93682 lncRNA downstream 44291 41405462 ~ 41405799 (-) True G75032
TU93617 lncRNA downstream 179907 41269927 ~ 41270183 (-) True G74978
TU93609 lncRNA downstream 186183 41262768 ~ 41263907 (-) True G74970
TU93582 lncRNA downstream 238779 41211039 ~ 41211311 (-) True G74950
TU93744 lncRNA upstream 102124 41553457 ~ 41554704 (-) False AMCG00014978
TU93821 lncRNA upstream 200003 41651336 ~ 41673042 (-) True G75145
TU93820 lncRNA upstream 218823 41670156 ~ 41672310 (-) True G75144
TU93838 lncRNA upstream 314199 41765532 ~ 41766815 (-) False AMCG00014981
TU93849 lncRNA upstream 361000 41812333 ~ 41815261 (-) True G75170
AMCG00014974 mRNA downstream 14462 41421861 ~ 41435628 (-) True AMCG00014974
AMCG00014972 mRNA downstream 34079 41413412 ~ 41416011 (-) True AMCG00014972
AMCG00014964 mRNA downstream 118320 41330438 ~ 41331770 (-) False AMCG00014964
AMCG00014967 mRNA downstream 223283 41177884 ~ 41226807 (-) True AMCG00014967
AMCG00014962 mRNA downstream 459299 40989672 ~ 40990791 (-) True AMCG00014962
AMCG00014973 mRNA upstream 1110 41452443 ~ 41460863 (-) True AMCG00014973
AMCG00014975 mRNA upstream 12261 41463594 ~ 41469552 (-) True AMCG00014975
AMCG00014971 mRNA upstream 19481 41470814 ~ 41474481 (-) False AMCG00014971
AMCG00014977 mRNA upstream 37556 41488889 ~ 41515465 (-) True AMCG00014977
AMCG00014978 mRNA upstream 86953 41538286 ~ 41561967 (-) True AMCG00014978
TU93668 other downstream 118424 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 280539 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 516136 40931797 ~ 40933954 (-) True G74890
TU93511 other downstream 524653 40922964 ~ 40925437 (-) True G74887
TU93508 other downstream 540704 40906381 ~ 40909386 (-) False AMCG00014958
TU93726 other upstream 18961 41470294 ~ 41472194 (-) True AMCG00014971
TU93975 other upstream 667954 42119287 ~ 42131232 (-) True G75272
TU94096 other upstream 840588 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 1057536 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 1072386 42523719 ~ 42534278 (-) False AMCG00015028

Expression Profile