RNA id: TU93820


Basic Information

Item Value
RNA id TU93820
length 1102
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G75144
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41670156 ~ 41672310 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttCTTTATActcaaaaatacatacagaaatatatatatatatttatatgactaacacaaaattaaacagcAGTGACTCCTCCCTTCAATCTATATgtcatcataataacaataacaatcaaaataataataataatacagacacAAACTGTTCCCTAGCTACTCACTGACAATACTTGCTCATATATTAAATCACTACAGCACAAGCTAGTTCAACTTCTCCTaactttagtttttctttacaaataaaatagaataaatcaGGTAAATGTGGtcgagcttttttttttcctttttcttttttatataaaaataataaaagatgaaTAGATTTTAAATAGCATTGACAGAGGAGGCAGACGCAGATTGGGCATCACTGTACTCTGCTGTtctgtactctactgcactgaCGTGTTAGTTGTGTTGCCCTATACTGAGAAATACATTCACtcacaatgtaataaaatacttaCTGTAGAATACAGCCCCATTACTGCGcgcagcacactgacacagtggAGTACAGCACAGCGGGAGTGACTGATGTGTTACACAGGCGGTATATGCGGGCAACAGTTCCTACCGCTTGCAGCAAAACAGACTGACTACAGTACATGACAGTATTGTACTAAACCAGGCTGATGTCACCTGCAGTAGAGGACAGCACACTGAAGCACAATAAACTACAGTCTGgtactgaaataaatgtcacaCTGAGCTACTGTAGGCTGTAGGCcaccagtacagcacagcactgtaaCGTGCCTTGCCGTGAGTGGCAGCTACACTTCATATTCTTGTGTCTGAGGagcagctgtctgtctgtctaagaAGTGCCCTGACCCTGTGTCCCTGTCCGTCTGTCTTGGAGCTCTTTCAACCCTGCGTCTCGGACTTGTCcccagtgtctgtctgtctgtctgtgggtgTGGACTATCTGTAATGGTCTGTCTGAGCTGCAGTGGTCTGGTCTGGTCTGAGCTGCTGGTTGGTCCCCAGTGCTGCCCTGCCCCCCTGCATCAGTCTCTACGCCAACCAAccgtctgtctgcctgcctgtctgtctgtctgtctgttggtcTGAGTGTATCAGCATCCAGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93744 lncRNA downstream 115452 41553457 ~ 41554704 (-) False AMCG00014978
TU93716 lncRNA downstream 218823 41450090 ~ 41451333 (-) True G75064
TU93685 lncRNA downstream 260544 41406917 ~ 41409612 (-) True G75035
TU93682 lncRNA downstream 264357 41405462 ~ 41405799 (-) True G75032
TU93617 lncRNA downstream 399973 41269927 ~ 41270183 (-) True G74978
TU93838 lncRNA upstream 93222 41765532 ~ 41766815 (-) False AMCG00014981
TU93849 lncRNA upstream 140023 41812333 ~ 41815261 (-) True G75170
TU93942 lncRNA upstream 305445 41977755 ~ 41991977 (-) True G75241
TU93949 lncRNA upstream 321253 41993563 ~ 42022081 (-) True G75247
TU93955 lncRNA upstream 388068 42060378 ~ 42063901 (-) True AMCG00015010
AMCG00014978 mRNA downstream 108189 41538286 ~ 41561967 (-) True AMCG00014978
AMCG00014977 mRNA downstream 154691 41488889 ~ 41515465 (-) True AMCG00014977
AMCG00014971 mRNA downstream 195675 41470814 ~ 41474481 (-) False AMCG00014971
AMCG00014975 mRNA downstream 200604 41463594 ~ 41469552 (-) True AMCG00014975
AMCG00014973 mRNA downstream 209293 41452443 ~ 41460863 (-) True AMCG00014973
AMCG00014984 mRNA upstream 2474 41674784 ~ 41687445 (-) True AMCG00014984
AMCG00014985 mRNA upstream 16243 41688553 ~ 41689983 (-) True AMCG00014985
AMCG00014983 mRNA upstream 18567 41690877 ~ 41698688 (-) True AMCG00014983
AMCG00014982 mRNA upstream 32145 41704455 ~ 41724237 (-) True AMCG00014982
AMCG00014981 mRNA upstream 83296 41755606 ~ 41766826 (-) True AMCG00014981
TU93726 other downstream 197962 41470294 ~ 41472194 (-) True AMCG00014971
TU93668 other downstream 338490 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 500605 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 736202 40931797 ~ 40933954 (-) True G74890
TU93511 other downstream 744719 40922964 ~ 40925437 (-) True G74887
TU93975 other upstream 446977 42119287 ~ 42131232 (-) True G75272
TU94096 other upstream 619611 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 836559 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 851409 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 1127841 42800151 ~ 42803287 (-) True G75497

Expression Profile