RNA id: TU93975


Basic Information

Item Value
RNA id TU93975
length 5047
RNA type TUCP
GC content 0.46
exon number 5
gene id G75272
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42119287 ~ 42131232 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGGGCCTGAATCTGAGGATGAAGTTCGTGTGCGGTCAGTGCTGGAGGGATGGCCAGGTCAGTGAGCCGGACAAAGCTCTGAAGTACTGCACCGCCAAGGCCCGGCACAGCTGGACGAAGGAGAGGAGGGTGCTGCTGGTGAAGTCCTTTGAGAAGAAGAAGTGGGTGGTGGTCCGGCCGCTGCCATTCTCCCGCACCTACCCGCTGCAGTATGACATGTGTGTCCACGTGGTGAAGCAGAAGAAGTGCCACTACATTGGGAACTGCTCGTTCGCGCACAGCCCAGAGGAGAGGGACGTCTGGACATACATGAAGAACAACAGCTtGAGAGACATGCAGCAGATGTATGACATGTGGCTCACACTGACCAATCAGAACCGGCGGACGGAAGGCCCTGCGCTGACCCCGCCCCCCGAGGAGAAGCAGATCACCATGCCGACGGACTACGCAGAGCCAATGGATGGAGGGCGGGGCCTGTCCGGACGGGGTGAGCTGTGACTTCGCCCACAGCCCCGAGGAGCTGGCAGAGTGGCAGGAGAGACGGGACTTCTTGCGGAGGAAGCTGGCGAAGGCGCGGGAAGACATGCTGATAGCGCCCACTGACAGCGACTTCGGGAAGTACAGCTTCCTCCTGCAAGACTGACACCCCCCCCacctgcactgcacagcacaacaagacaaacacactcgcacacacagcacacacagagagagagagagagagtgagaccgCACGCGCGCGCATGtgcgcgcgcgcacacacacacacacacacacacacacaagactgaTACTGTAGGAAGTCCAGACAGACTGCACAGTTGGTGCTGACCTAAGCAGCACGCTGAAGGAGAAGCGGACTGTTCCATGTTCTCTCATTTGGGGTGGGTCATAAGTGTTTCCCTGTTAAGACCCTTTTGTCCAAAagacaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacacagTGCCCTGACAAGATACAATtagcacatatacatacatgcatctATGTACTGTATAGAGTCCTTCTGTGCTGGTGCGTGTGTATATGACAGAGCAGTCTCCTTCCCACAGGCCCCTGATGCAGGCTGCATCACGACCATTACCATAATTAATTCAACTGTTTGATAATGCAAattcttttattgttattatacttcagcaaaccattttaatttaccAGTCAGATTAACCAGGGGTATTGCAGCTGGTGCGCACTGGGACTGCAAGCATCTTCAGTACGAATCTAACAGATCTGTAACACATCACATGACACACTAACACATATAACCGTAAATATATCACTCGTTTCTCTATATGGCTTCCTCCATCAAGACGTGTTGCCCATTTCCAGTCAGAAGGAATGTAATAGTGCGCAACCCACATATTTATGAATCATGTTAAAACGTGTGGATTATAGATCAAGATCTACAAGATCTATTTGAAATGCATCCCATAgatttgaaatgtgtgcaaaaaggaggaggagggaatgAGGAGGTGGGATGGGCATCTTTGTACCATGTGATAAAGAGACTTTCTATGTGTAGAGGGGCTGCCTCTCTGGATGCCAGTTGGTACATGGGTTGATTTGCCCAACACATATCGAGGAATATTCAAGTCTCGTGAAGCTATCTGGGTCAGCTCACGATCCTCAACCTCTTGCATGACTCCCAAGGGCGCCTCCCTCCTGCACTGCACCATAATCCTAGTCCCAGACAGCGCAGGGCCGAAGGAAGGCCAGGGATGGGCGTTCATAGGGCAGCTTTGGCTAAAATGAATGAACAGCATCAAAAACTGGACAGCCCACACTGCCAGTGAGCGGTCCAGTCCTGGTTTCGCTGTCAGCCGGATTGCTACACGGcatcccctctctcccctcctcctctgaaACCTGTTGTggtgccccctccccccacattAGCAACTGTTCGTAGTCCAGAGTTCAAAGGGCGCCAATGTATGAGCTCTAAGATTTTTTCACCACAGCGCCCGGGAGAGTTCTGTGCAAGTGACTCACCCacactcactcatacacacCTGAAcattgtgtgtctatgtgtacatttgtatgtgtaGGAGTGTCACCAGTGCTAATTTTATTCTGACAGGGTGCTGTGTACACCTCACTGTGAGGCTTGTTATTGGAGCACAGAGCTCCTGTATGTCTGGGGCATCAGAGACAGGAACTCAGCGCCAGTCTTCCCAGTCTGTCCAGCACTGCACATCCTGACAACAGTcctcaaacacttttttttttaatcctttagATTTTGTCTTGTGTTCCTGTGTACAAATTCTACATAAAGCCCTGTTCCTCAATTGACAAttgatttttgttatttttataattaatatattttttgtattattcatcaAACCATTTCAGTGACTCTGTGGAAAACATTCTCATGCACTTGTGCAGATGCAtacaggtacacacacacacacacacacatcacagtaTTTATTGACTGGAAGCATCAAATCACATGGGGAGGGAAGATGGATGGAGGAGGGCAGGGATCTCCTCTTTGGGGGGAACAAGGCAGCCCGGTCCCAACCCCCCCAGTTCTAGCTGGCAGGGTTCTGGACACTTCTGTTGTGAGTCCCCAACTTTGGACGTGACTCCCGGGGACGGTTCCCTGATTTCAGCATAACCATGGTCTGGGCAGCCCTCCCAAGGGCTTTGAGACGCACGAAACAAAACGAGGAGGTTTCCACCCCTGACTGACAGTCTGACTTACTGacttttgttggtttgcattCCTGCTGTGTTCACCATCTGCGGACGGGGTGTTTAGAAAGGGAACACAGGGTAGGAAGTGGCAGGAGGCAGCCTTCGCAACATAGTGAACAGCCTTCTCCAGTAAGGCATCTACACCTGCCTGCATAtacctgaatatatatataggcaacACTGCTTTAATCAGCCAGCCCTTGCCCTGATATATCATGAGACTGGACCCAtatgtccacacacacacacatacatacagatatatatatatatatccattacaatattatatgagaacaatgaataaaaacatcagtatactaataataattaataataaatttaGCTGTTAAGCTTAATTAAACCATAACCTTATCTTGTTATTGATTATATATTaccctttattttgtgttattgatCTGTATTGCTCTGCCCTATAATGGCTGTACTATGCAGTGTTAGACTGTAGATTTTCTGCTTGTtagggagggaggtgggggtcATTCTGATTGAAGAATTGGTTTGTTTATGGTTTGTTCTTTCAGGGTGTGCATagtgggaggaggaggtggggccAGGGCCAGTGTCTGCACTGGCTGGTTAGAGGGGGTGCTCTTCTGTGGTTTTGTCTGTGCAGTACTGTAGTCTTCTGTACAGCAGGGTCTCTAGTCCTGTCgagacagtacagtacagcacagtctccagccctggtcctcaAGAGAGTGCTGTtgggtgctgtgctgtactgtagctctccagCACCATCGCCGACCGCAGTGGAGGTGGCCCAGCTCTGACCGTGGTGTCAGACACTTCTTGGTGTGCACATGAACAGAACAGAGGGATAACTGCTGAAGGGAATGACCCTgagtatttgcttattttttggaggtattcttattttgtattattattattactattattatgattacaattATTACTAAAATTATGATTActactattgttattatatattttttcgtTGCTTATATGCTATTGATATGTATATGTTAAATGCCATTCATAGCTCCCTTTatagctgtactgtactggactatagagtgtacagtgtgtgggCGTCTGTGGGTGAACCCTGTGAGGGCTTTGACACCCCTCCCCTGCACTTTCCTGTAGCCAGCTAGACCGATGCTAATTTATTCtcactataattattataatgtgctGTATTCCACCAGTTGATCAGTAGTTGATTCATTGGATGGGTAATTGATTCATTGGATGGGTATTTGATGGAttgagaaaacaagaaacaccGACTAGATAACTTTACCTCCTTGGCAGTAGCCAGTGTCACCCCCAGACGTCCACATTCACCTGCATTGccttatactatatatataatgatatctatataaaaatataaaaaaagtattatctTATATGTATAATCAATTCTTTctctattataaatatatatacttatataaatataaacttagACACTTTAATTGGAACATAAACGTGGGGGGTGACTGGGTCTGTGTCGAATGGCTGTGGTTGGTTTGTACCAGTGTCTTAACTCAGACTCcatagatatacatatacatgatTTCACctcagtggagggagcagaagTGCTCAAAGATTTACACttaccctccctccctctgtcacacttacacaaacacacactctttcGCACACATGgacggtctctctctctctctctctctctctcaccttcctCTGTCTCCACACAGCCCCACTATTGACATTCACACCATTACACCTTAACCAGCAACACAGTATCAAAAGGAAGGCAACCACCCAAAGGACACAGATGCCACTCTCACTTACGTCGCCACACAACTGGGTTACACTGGGCTGGGGGGGACCTGCAATCATGGGtctgccagtgttgtgaaacgGGCCCCAGCAATGCACAGCCATTCGATTACAGCTAGTTCCACCTCTTAcctaataaaaatgttacacagAAAAGAAACGCAGGGTGGGGTGGTGAGAGAACAGATATCCAgcgattttctttattttcgaTATACACCAAGACAGGGCGTGGAGATAATCTAACaggtttaaaaaggaaaaaaagaaaaataaaaaacaggaaaaatatattttttaaaaatatggaaaaaaatcttttttttttgtggtagatttttatgttttctgtttctctttttttcttttttctcctcgtGTTGAAAATCACAATTTGGAAAGTGGTGGtgataattatgatgatgatgatgatgatgacaaatGGACCAAAATCTGAGATTAACAATAAACGGAAGATGTTTTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93955 lncRNA downstream 55386 42060378 ~ 42063901 (-) True AMCG00015010
TU93949 lncRNA downstream 97206 41993563 ~ 42022081 (-) True G75247
TU93942 lncRNA downstream 127310 41977755 ~ 41991977 (-) True G75241
TU93849 lncRNA downstream 304026 41812333 ~ 41815261 (-) True G75170
TU93838 lncRNA downstream 352472 41765532 ~ 41766815 (-) False AMCG00014981
TU94054 lncRNA upstream 36292 42167524 ~ 42167876 (-) True G75333
TU94090 lncRNA upstream 155062 42286294 ~ 42286584 (-) True G75364
TU94091 lncRNA upstream 155426 42286658 ~ 42286893 (-) True G75365
TU94093 lncRNA upstream 157957 42289189 ~ 42289415 (-) True G75367
TU94094 lncRNA upstream 158358 42289590 ~ 42289858 (-) True G75368
AMCG00015006 mRNA downstream 7146 42106897 ~ 42112141 (-) True AMCG00015006
AMCG00015007 mRNA downstream 22003 42083044 ~ 42097284 (-) True AMCG00015007
AMCG00015008 mRNA downstream 48324 42063997 ~ 42070963 (-) True AMCG00015008
AMCG00015010 mRNA downstream 56393 42060290 ~ 42062894 (-) False AMCG00015010
AMCG00015001 mRNA downstream 81087 42023102 ~ 42038200 (-) True AMCG00015001
AMCG00015009 mRNA upstream 3681 42134913 ~ 42147238 (-) True AMCG00015009
AMCG00015017 mRNA upstream 52456 42183688 ~ 42196495 (-) True AMCG00015017
AMCG00015016 mRNA upstream 65265 42196497 ~ 42213025 (-) True AMCG00015016
AMCG00015015 mRNA upstream 95666 42226898 ~ 42234065 (-) True AMCG00015015
AMCG00015020 mRNA upstream 178491 42309723 ~ 42313025 (-) True AMCG00015020
TU93726 other downstream 647093 41470294 ~ 41472194 (-) True AMCG00014971
TU93668 other downstream 787621 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 949736 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 1185333 40931797 ~ 40933954 (-) True G74890
TU93511 other downstream 1193850 40922964 ~ 40925437 (-) True G74887
TU94096 other upstream 160689 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 377637 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 392487 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 668919 42800151 ~ 42803287 (-) True G75497

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010200 True 3660 mRNA 0.49 22 NC_007123.7 19158832 ~ 19185865 (-)