RNA id: TU94096


Basic Information

Item Value
RNA id TU94096
length 375
RNA type TUCP
GC content 0.57
exon number 1
gene id G75370
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42291921 ~ 42292295 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggaCACAGAGCAAGAGAGAATTGAATGGTATGTATTGTACAGTATGCAAGGGCAGAAGAACACTGGGATGTACTCACGTCTGGGGCTGCGAGGGGTCGTCTCCCAGGGATACGCTGTCCCCCTGGATTTCGTTGAAACACTTCTCGCAGAAGTGGTACCTGTCAGCAAGAAGCCCATATTTCGGTGAACTATACGTTCACACAACCACAGGCAACCATAGCAACGGCGAAGCAGCCACCAatcagggcagggcagggcaggccAAGGGGGGCGGGCACACAGGCGGGGCACGGCGGGCAGGTGGGAGGAGCAGAGGGCGGGGTCGTCATCACGGTGACAAGGACAGCCAATCATGGTCcaggatttgatttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94095 lncRNA downstream 1655 42289909 ~ 42290266 (-) True G75369
TU94094 lncRNA downstream 2063 42289590 ~ 42289858 (-) True G75368
TU94093 lncRNA downstream 2506 42289189 ~ 42289415 (-) True G75367
TU94091 lncRNA downstream 5028 42286658 ~ 42286893 (-) True G75365
TU94090 lncRNA downstream 5337 42286294 ~ 42286584 (-) True G75364
TU94097 lncRNA upstream 1176 42293471 ~ 42293724 (-) True G75371
TU94098 lncRNA upstream 6050 42298345 ~ 42298792 (-) True G75372
TU94099 lncRNA upstream 6622 42298917 ~ 42299142 (-) True G75373
TU94100 lncRNA upstream 6920 42299215 ~ 42299497 (-) True G75374
TU94109 lncRNA upstream 28801 42321096 ~ 42324920 (-) False AMCG00015023
AMCG00015015 mRNA downstream 57856 42226898 ~ 42234065 (-) True AMCG00015015
AMCG00015016 mRNA downstream 78896 42196497 ~ 42213025 (-) True AMCG00015016
AMCG00015017 mRNA downstream 95426 42183688 ~ 42196495 (-) True AMCG00015017
AMCG00015009 mRNA downstream 144683 42134913 ~ 42147238 (-) True AMCG00015009
AMCG00015011 mRNA downstream 157472 42130045 ~ 42134449 (-) True AMCG00015011
AMCG00015020 mRNA upstream 17428 42309723 ~ 42313025 (-) True AMCG00015020
AMCG00015022 mRNA upstream 26499 42318794 ~ 42321081 (-) True AMCG00015022
AMCG00015023 mRNA upstream 29522 42321817 ~ 42325005 (-) False AMCG00015023
AMCG00015021 mRNA upstream 33885 42326180 ~ 42332650 (-) True AMCG00015021
AMCG00015025 mRNA upstream 61206 42353501 ~ 42354515 (-) True AMCG00015025
TU93975 other downstream 160689 42119287 ~ 42131232 (-) True G75272
TU93726 other downstream 819727 41470294 ~ 41472194 (-) True AMCG00014971
TU93668 other downstream 960255 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 1122370 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 1357967 40931797 ~ 40933954 (-) True G74890
TU94183 other upstream 216574 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 231424 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 507856 42800151 ~ 42803287 (-) True G75497

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU192218 True 2161 lncRNA 0.37 2 CI01000034 716155 ~ 718431 (+)