RNA id: TU94121


Basic Information

Item Value
RNA id TU94121
length 1108
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G75384
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42345650 ~ 42346781 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacccaggaacaaaacaaaaaaaaagaaaacatttacactgTGTTATTACTATTGCTACTATTAGCCATGGCCTGTGTTGTAGTATTGCTACTCCAGTGTTCGTACATCCAGGATTTCTGACTGACACGCCCTTACccacaaacacagaaaccagCGACACTCAAGAGTTCCATTTTTATACAGAAATCAATTGCACAGTCAGTTGCAGTGAGTAGGGTCCCCTGGCTGCAACAGTACAGCCTCCATATAGGACAGCTGGGCTGGGGGGAGAATGGCTTGGCAGATGTGTACAATCACCAGGCAGAACTGAAACTAAACAGCAACATAGGAAATTGattgtacaacaacaacaataatagtagtaattCATAATAGTAAgaaagaataaatcaaaacatcacaTCAGGAAAATATTCAGACTAAACAAATCAGTGCtttacacaaagaaaataaataaatgcaggagATGGGATTGGCTGGTCTACTACTCTCTCCGATTGGCCTGCAGAGGGAGGTGGGAGGTGTTGGTTGTTGGCAACATCGATCAAAAAACAGCCCCCCCtttcccccaaaaaagtaattgggggaaaatattaaaaatccaCTTGCCTCTAAGTTATGAATCTGTTAATCATGGCTTGTACTGACTGCTTGATTGACAATGACATAACACTGGCCCAAGTCTAGTGCACAGTACTCTAGCACACAACCTCACCAGACTGACACTGAAGCACTAAGTCTTCATCAGTGTGATTGTAAGCGTGAGGGTGTCTCTCTCTATTACATAAACATACCCTCTctcacatatatacacatacagagacagagagggtgagtgaggaagagagagagagagagagagagagactccacTCAGTACTAGGCAGCAGGGTTGGTAAAGAGACAGATGTGTTACAGATGCATGTGTGACAATGTGCTGGGGGGTAAggtctgtggggggggggtctatCTCTGACTGGGGTGACCATTGATAATGTTCCCACCCGGGGGCTGGATGTGGATGGAATCCAGGATGGGCCGCAGAACCTGGCCAAAcggtctgagagagagagagagagagagagagagagagagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94109 lncRNA downstream 20730 42321096 ~ 42324920 (-) False AMCG00015023
TU94110 lncRNA downstream 20730 42321096 ~ 42324920 (-) True AMCG00015023
TU94100 lncRNA downstream 46153 42299215 ~ 42299497 (-) True G75374
TU94099 lncRNA downstream 46508 42298917 ~ 42299142 (-) True G75373
TU94098 lncRNA downstream 46858 42298345 ~ 42298792 (-) True G75372
TU94151 lncRNA upstream 130227 42477008 ~ 42487718 (-) True G75403
TU94155 lncRNA upstream 144929 42491710 ~ 42491924 (-) True G75406
TU94188 lncRNA upstream 209848 42556629 ~ 42580140 (-) False AMCG00015035
TU94189 lncRNA upstream 229177 42575958 ~ 42580140 (-) True AMCG00015035
TU94196 lncRNA upstream 240231 42587012 ~ 42589623 (-) False AMCG00015035
AMCG00015021 mRNA downstream 13000 42326180 ~ 42332650 (-) True AMCG00015021
AMCG00015023 mRNA downstream 20645 42321817 ~ 42325005 (-) False AMCG00015023
AMCG00015022 mRNA downstream 24569 42318794 ~ 42321081 (-) True AMCG00015022
AMCG00015020 mRNA downstream 32625 42309723 ~ 42313025 (-) True AMCG00015020
AMCG00015015 mRNA downstream 111585 42226898 ~ 42234065 (-) True AMCG00015015
AMCG00015025 mRNA upstream 6720 42353501 ~ 42354515 (-) True AMCG00015025
AMCG00015024 mRNA upstream 41536 42388317 ~ 42389132 (-) True AMCG00015024
AMCG00015026 mRNA upstream 57557 42404338 ~ 42428775 (-) True AMCG00015026
AMCG00015027 mRNA upstream 86360 42433141 ~ 42438138 (-) True AMCG00015027
AMCG00015031 mRNA upstream 166193 42512974 ~ 42521901 (-) True AMCG00015031
TU94096 other downstream 53355 42291921 ~ 42292295 (-) True G75370
TU93975 other downstream 214418 42119287 ~ 42131232 (-) True G75272
TU93726 other downstream 873456 41470294 ~ 41472194 (-) True AMCG00014971
TU93668 other downstream 1013984 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 1176099 41169041 ~ 41169551 (-) True G74945
TU94183 other upstream 162088 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 176938 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 453370 42800151 ~ 42803287 (-) True G75497

Expression Profile