RNA id: TCONS_00009335


Basic Information

Item Value
RNA id TCONS_00009335
length 545
lncRNA type lincRNA
GC content 0.46
exon number 5
gene id XLOC_004711
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 23454429 ~ 23605722 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGAATCGACTCCGAGCCCAGCTGGCACATGTTTATGCGATTTTGTCACAGCTGGGTCGAAGAGATGTGCTCCTAAACTgcTCGAGAGACAGTCCAGACGAAATTTCTAAAATCTTCATGAAGAACGTGACATCATTTTGGATGGCCTAAGGGGAATTACCCATTGAGATGTGGACGGAACCTTGAGTAAATCCTCTGGAAACAAACAGaaccgttcttcaccaaacTCAAACCTCGTTGTCGCGGTCAGCTCCTCTCTACAGCTTAAGTCTGCAGATATACATGGCGAGCCAactggtcaaactggtaacattggaaaagctgtccatacagagatACCACCACATTACGTCACTGAAGGTCCTGGGTGTTCAAAAATGTAGTCACGGGCAGACATCGGCAGGAAAGATCTCTTTAAGGATGAAACAGATAATAATGTTGCTGTCTGTTTCTGGTCTTCCATGGTGGTTGTTGGTGTGCATTGACACATGAAGGCCTTCAGATGGAGAATGAGGCAGGGACCATATAGATGTGTCCTGAATGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000134063

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010928 lncRNA upstream 414638 23037447 ~ 23040091 (+) True XLOC_004707
TCONS_00010735 lncRNA upstream 835607 22618388 ~ 22619122 (+) True XLOC_004701
TCONS_00009303 lncRNA upstream 1027674 22423953 ~ 22427055 (+) False XLOC_004697
TCONS_00010927 lncRNA upstream 1149888 22289980 ~ 22304841 (+) True XLOC_004696
TCONS_00010734 lncRNA upstream 1195331 22258962 ~ 22259398 (+) False XLOC_004696
TCONS_00010933 lncRNA downstream 3130 23589024 ~ 23605722 (+) False XLOC_004711
TCONS_00010934 lncRNA downstream 4108 23590002 ~ 23605722 (+) True XLOC_004711
TCONS_00010935 lncRNA downstream 63998 23649892 ~ 23651056 (+) True XLOC_004713
TCONS_00010736 lncRNA downstream 193058 23778952 ~ 23779177 (+) True XLOC_004716
TCONS_00010737 lncRNA downstream 226636 23812530 ~ 23859432 (+) False XLOC_004717
TCONS_00009334 mRNA upstream 24373 23424108 ~ 23430356 (+) True XLOC_004710
TCONS_00009333 mRNA upstream 38668 23371542 ~ 23416061 (+) True XLOC_004709
TCONS_00009331 mRNA upstream 521205 22921492 ~ 22933524 (+) True XLOC_004706
TCONS_00009329 mRNA upstream 539029 22870372 ~ 22915700 (+) False XLOC_004705
TCONS_00009337 mRNA downstream 78441 23664335 ~ 23674621 (+) True XLOC_004714
TCONS_00009338 mRNA downstream 177072 23762966 ~ 23796566 (+) False XLOC_004715
TCONS_00009339 mRNA downstream 177072 23762966 ~ 23796707 (+) True XLOC_004715
TCONS_00009340 mRNA downstream 226636 23812530 ~ 23932576 (+) False XLOC_004717
TCONS_00009342 mRNA downstream 264767 23850661 ~ 23870648 (+) False XLOC_004717
TCONS_00009332 other upstream 344452 23110163 ~ 23110277 (+) True XLOC_004708
TCONS_00009330 other upstream 522708 22921477 ~ 22932021 (+) False XLOC_004706
TCONS_00009319 other upstream 708946 22677953 ~ 22745783 (+) False XLOC_004704
TCONS_00009313 other upstream 793349 22657923 ~ 22661380 (+) False XLOC_004703
TCONS_00009307 other upstream 876199 22578404 ~ 22578530 (+) True XLOC_004700
TCONS_00009341 other downstream 252905 23838799 ~ 23866353 (+) False XLOC_004717
TCONS_00009347 other downstream 324938 23910832 ~ 23910949 (+) True XLOC_004718
TCONS_00009349 other downstream 337431 23923325 ~ 23932015 (+) True XLOC_004717
TCONS_00009353 other downstream 628507 24214401 ~ 24214517 (+) True XLOC_004721
TCONS_00009355 other downstream 756437 24342331 ~ 24345493 (+) False XLOC_004722

Expression Profile

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