RNA id: AMCG00015076



Basic Information


Item Value
RNA id AMCG00015076
length 924
RNA type mRNA
GC content 0.56
exon number 9
gene id AMCG00015076
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 1487434 ~ 1489959 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATGCCACGAGACGATGCTCCACGGGAGGAGTTTAGTTATGACCACATACCGACGCTGGAGCGGGCGCAGCACGGGGACAGTGACAGCTACACTGTTGACGTCAAACCCAGTGACCTGCAGCCCTCCCCCACACTGCACCCCTGTCTCAGCTACAGGGCATGGCTCTACAGCATCCTCATAGGGgGCAGCCTCCTCATCACGGCCGGCTTCTCCCTGTACCTGGGCAACGTGTTCCCCTCAGCCATGGACTACCTGCGCTGTGCTGCTGGCTCTAGTGTCCCTGCAGCCATGGTGAGCTTTGCTATTGCAAATAACAGGCATTCCATGGTGTCTGATTACCAGGTTCTGTTCGTCTCTACCTTTGCTGTGACAACGACTTGCCTGGTCTGGTTTGGCTGCAAACTGGTTCTTAACCCTACTGCCATTAATATCAACTTCAATCTGATCCTGCTGATCCTGCTGGAGGTCCTGCTTGCCAGCACTGTCATCCTGTCAGCCCGCTCAACTGAGGACTGCTGCAGCCGCCGcaggACTGTTACCTGTGACCCCCCAGTGGTGCTGACACCCCCGCACTTCCCTTCCAGGCTGCTCAAGTCCTATTCTGTGATTGAGGTGATAGTGGGTGTGTCCGCTGTGTTTGGAGGGATCATTGCTCTCAACATGGATGCCCTGGTCTCGGGACCATACCTCTCTGTTACCTTCTTCTGGATCCTGGTGGCTTGCTTCCCCAGTGCTATTGCTAGCCATGTTGTGGCGGAATATCCCAGCAAGTGCCTGgTGGAGGTCTTGATTGCGATCAGCAGTGTGACATCACCTCTGCTCTTCTCAGCTTCTGGGTTCCTGTCCTGCAGCATCCTGCGCTTCATCCACATCTTCCAACACGATGTGCCAACTGCCAAGGTCAGCTCTGGCACAACCTAG

Function


GO: NA

KEGG:

id description
K20070 MLC1; membrane protein MLC1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU118745 lncRNA upstream 126045 1360813 ~ 1361389 (+) True G95209
TU118739 lncRNA upstream 132699 1347049 ~ 1354735 (+) True G95205
TU118723 lncRNA upstream 180437 1306797 ~ 1306997 (+) True G95190
TU118722 lncRNA upstream 203388 1283707 ~ 1284046 (+) True G95189
TU118677 lncRNA upstream 295051 1162969 ~ 1192383 (+) True G95148
TU118803 lncRNA downstream 28699 1518658 ~ 1539558 (+) True AMCG00015077
TU118813 lncRNA downstream 49679 1539638 ~ 1539890 (+) True G95268
TU118815 lncRNA downstream 50044 1540003 ~ 1543430 (+) True G95270
TU118823 lncRNA downstream 75076 1565035 ~ 1565242 (+) True G95278
TU118824 lncRNA downstream 76466 1566425 ~ 1566701 (+) True G95279
AMCG00015067 mRNA upstream 593396 888014 ~ 894038 (+) True AMCG00015067
AMCG00015058 mRNA upstream 1345631 140790 ~ 141803 (+) True AMCG00015058
AMCG00015075 mRNA downstream 19419 1509378 ~ 1517119 (+) True AMCG00015075
AMCG00015077 mRNA downstream 29281 1519240 ~ 1538536 (+) False AMCG00015077
AMCG00015079 mRNA downstream 55272 1545231 ~ 1546105 (+) True AMCG00015079
AMCG00015081 mRNA downstream 102864 1592823 ~ 1596862 (+) False AMCG00015081
AMCG00015080 mRNA downstream 147822 1637781 ~ 1658932 (+) True AMCG00015080
TU118644 other upstream 548448 879089 ~ 938986 (+) True G95117
TU118603 other upstream 940689 546229 ~ 546745 (+) True G95078
TU118826 other downstream 92235 1582194 ~ 1596895 (+) True AMCG00015081
TU119071 other downstream 710978 2200937 ~ 2217102 (+) True G95486
TU119235 other downstream 1167526 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 1174545 2664504 ~ 2666126 (+) True G95624
TU119325 other downstream 1316852 2806811 ~ 2808495 (+) True G95693

Expression Profile