RNA id: TU118803


Basic Information

Item Value
RNA id TU118803
length 1611
lncRNA type sense_over
GC content 0.40
exon number 4
gene id AMCG00015077
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 1518658 ~ 1539558 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATGGTGTTGACTTGAGTGTGTGAGGGATAACATTGTCATAACATTTGTACAGAGACACCTTGATAGTCTTTTGAGCACCCACCCATGGAATACCAGTGAAATACGTAGACTACACTTCCCAGCATGCAGTGGCGCAAGTGGGCAGAAAACTGGAGGAAGCAGTCTTACCTGCCAGAACAGATCATCTTGATTGGGGACTCCAATGTTGGCAAGACATGCGTTGTCCAGAGTTTCAAAACTGGAATTTTTACAGAAATGCAACAAAACACCATTGGAGTGGATTTCACTGTACGGACCTTGGACATTGAGGGCAAGAGACTAAAGGGAACAAGAGTGACCTGGCTGCACAACGGCAAGTATTGTTTGAGGATGCTTGCACCCTGGCAGAGGAAAAGGGGATCCTGGCTGCCCTAGAGACATCTGCCAAGGAGGCCCAGAATGTGGATGAGGCCTTCCTGCTGATGGCTCGTGAGCTGATGGCCCGCAATGGGATGCAGGTTCAAACTGAGTCTCCTCGATTATTACTGCATACAAACTCCCATCCCATCAACACCCAGGCCCAAGAGAAAAAGTCCTGCAACTGCTGAGGGATGAGCTTACATCAGATGAAAGAAACCCCAGTTCCACTTAAGCACGGCTGCTAAACTCTTGGGACATTTGATAGCAGACCATGTCCAACTGATAAGGTCATATatggttctgtttttttatttgtttttgtttaagtgtgtatgtgtgtgtacaaaaaaacagaaaacactattttgttctGAATGAAATCTGAAGTCACTTTCAGATGTAAACATAATAGGAAAAAGGTTCACTCCACAAACACAACCAACAGTGAGATGTGTTCTTGTTCCTGAATCTCAACCCTCGAGACAATTATTCTACTCTTTGTTTGTCCTCTTACAATAGCTTTCAAACAAAGGTTTGccaaataattgtatgtacCTTGCCTGTATAGCAactagtttaattaaattacatctcCTAGattagttagttagttgattGCTTGCAGATTCCTTGTTCTGGTGTGTCTATACACATTCTGGATTGGGGCAAGAGCGTCACTTtgtactattaaaaaaaaaaatcaacaacaggtatttggtttgttttcctgatttctataaatacatttgtcatgtggacatatttcaacctcgcctccaaaatatagaagtgcaaacacatgcataatgtcggttgatatGGACTTTTtcactggtgatatgtggttgtgaagcaaatatatgtttttcgATTTCGAAACTACTCAgaatcgcgcatttcaggtttccaattttcaaaatcttatgggggaggacccccagaccccccgccCTCAATTACTCAATCCTCtttgcaacattaattttgtgcagtggatagtgggacaaaggggaataatgaagacttgaatctaataagagaCAAAATGCTTGCAAGTTTCTATCATGTTTAATCCTTAACCAATTAAAACGATTTAAAATggtctgaaaacattttaatacttatatttacatttatttaaacgttttatttttgtacgtTGTCACAGGGGATAGTAtatggagtgaattcactgtcaaaattagcgaGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118745 lncRNA upstream 157269 1360813 ~ 1361389 (+) True G95209
TU118739 lncRNA upstream 163923 1347049 ~ 1354735 (+) True G95205
TU118723 lncRNA upstream 211661 1306797 ~ 1306997 (+) True G95190
TU118722 lncRNA upstream 234612 1283707 ~ 1284046 (+) True G95189
TU118677 lncRNA upstream 326275 1162969 ~ 1192383 (+) True G95148
TU118813 lncRNA downstream 80 1539638 ~ 1539890 (+) True G95268
TU118815 lncRNA downstream 445 1540003 ~ 1543430 (+) True G95270
TU118823 lncRNA downstream 25477 1565035 ~ 1565242 (+) True G95278
TU118824 lncRNA downstream 26867 1566425 ~ 1566701 (+) True G95279
TU118847 lncRNA downstream 203984 1743542 ~ 1772882 (+) True G95298
AMCG00015075 mRNA upstream 1539 1509378 ~ 1517119 (+) True AMCG00015075
AMCG00015076 mRNA upstream 28699 1487434 ~ 1489959 (+) True AMCG00015076
AMCG00015067 mRNA upstream 624620 888014 ~ 894038 (+) True AMCG00015067
AMCG00015058 mRNA upstream 1376855 140790 ~ 141803 (+) True AMCG00015058
AMCG00015079 mRNA downstream 5673 1545231 ~ 1546105 (+) True AMCG00015079
AMCG00015081 mRNA downstream 53265 1592823 ~ 1596862 (+) False AMCG00015081
AMCG00015080 mRNA downstream 98223 1637781 ~ 1658932 (+) True AMCG00015080
AMCG00015082 mRNA downstream 139172 1678730 ~ 1682241 (+) True AMCG00015082
AMCG00015084 mRNA downstream 162962 1702520 ~ 1718774 (+) True AMCG00015084
TU118644 other upstream 579672 879089 ~ 938986 (+) True G95117
TU118603 other upstream 971913 546229 ~ 546745 (+) True G95078
TU118826 other downstream 42636 1582194 ~ 1596895 (+) True AMCG00015081
TU119071 other downstream 661379 2200937 ~ 2217102 (+) True G95486
TU119235 other downstream 1117927 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 1124946 2664504 ~ 2666126 (+) True G95624
TU119325 other downstream 1267253 2806811 ~ 2808495 (+) True G95693

Expression Profile