RNA id: AMCG00015079



Basic Information


Item Value
RNA id AMCG00015079
length 864
RNA type mRNA
GC content 0.40
exon number 2
gene id AMCG00015079
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 1545231 ~ 1546105 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAAGTTTGCATAGTGTATGATACATGGAAACAAGACCGAACCATAGATGTGCAAATATCCGCCGACTACAAAAAAGAGGTGAACTTTTGGAATTATGTATTAACCAGAATCACAGATGTAACGTTTTCACTTCCTGCGTCTAACTCCGCATTCCGAGGCCACACAGAAAAGATAAGAGATACAGATAGAAATGGAAACTTCTTCTCTACGATCAAACTTATAGCTAGATATGACCCAGTGTTGCAAAAGCTTATGGATAGAGAAAGCAGAGTAACCTACCTAAGTCCTAGGATTCAGAACAAACTCATCCAGTTGTTGTTCAAAGAAGTCCAGGTGCAAATACAGAACGAGATCCAGAACACTAAATTCTATTCCGATATATCGAAAGTCGACCAGTTAAGTCAGGTGTTTAGATATGTCACCATTCCCgtagatgaaaatgaaatacctACTGAAGTGAAAATCAATGAGAATTACCTGGGTTTTCATAATGTTACAGATCAAAGTGCAGTAGGactggaaaaacacattgtggATTTCATTGAAAGTAAGGGGACAGAAATCAGTAAGTATAGGGGACAAGGCTATGATGGTGCGAGTACCATGAGCAGAGTGTACTCAGGTGTACAGAAACGAATAGCAGACAGGGAGCCCAATGCTGTATATATTCACTGTGCTGCGCACAATTTAAACCTTGTCCTAAACGATGCCTGTCAAAATGTTCCTGAGGTGAATGACTTTTATGACATTGTGCAAAGATTGTTTGTGTTCTTTAGTGGGAGCATTAAAAGGTGTGAACTACGAGATGGGCATCCAGGCACAATGCTATTCATTCATTGCGGTTCCGTTATGCAGATATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU118815 lncRNA upstream 1801 1540003 ~ 1543430 (+) True G95270
TU118813 lncRNA upstream 5341 1539638 ~ 1539890 (+) True G95268
TU118803 lncRNA upstream 5673 1518658 ~ 1539558 (+) True AMCG00015077
TU118745 lncRNA upstream 183842 1360813 ~ 1361389 (+) True G95209
TU118739 lncRNA upstream 190496 1347049 ~ 1354735 (+) True G95205
TU118823 lncRNA downstream 18930 1565035 ~ 1565242 (+) True G95278
TU118824 lncRNA downstream 20320 1566425 ~ 1566701 (+) True G95279
TU118847 lncRNA downstream 197437 1743542 ~ 1772882 (+) True G95298
TU118984 lncRNA downstream 439880 1985985 ~ 1995456 (+) False AMCG00015092
TU118986 lncRNA downstream 444523 1990628 ~ 2080837 (+) False G95415
AMCG00015077 mRNA upstream 6695 1519240 ~ 1538536 (+) False AMCG00015077
AMCG00015075 mRNA upstream 28112 1509378 ~ 1517119 (+) True AMCG00015075
AMCG00015076 mRNA upstream 55272 1487434 ~ 1489959 (+) True AMCG00015076
AMCG00015067 mRNA upstream 651193 888014 ~ 894038 (+) True AMCG00015067
AMCG00015058 mRNA upstream 1403428 140790 ~ 141803 (+) True AMCG00015058
AMCG00015081 mRNA downstream 46718 1592823 ~ 1596862 (+) False AMCG00015081
AMCG00015080 mRNA downstream 91676 1637781 ~ 1658932 (+) True AMCG00015080
AMCG00015082 mRNA downstream 132625 1678730 ~ 1682241 (+) True AMCG00015082
AMCG00015084 mRNA downstream 156415 1702520 ~ 1718774 (+) True AMCG00015084
AMCG00015085 mRNA downstream 179515 1725620 ~ 1742582 (+) True AMCG00015085
TU118644 other upstream 606245 879089 ~ 938986 (+) True G95117
TU118603 other upstream 998486 546229 ~ 546745 (+) True G95078
TU118826 other downstream 36089 1582194 ~ 1596895 (+) True AMCG00015081
TU119071 other downstream 654832 2200937 ~ 2217102 (+) True G95486
TU119235 other downstream 1111380 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 1118399 2664504 ~ 2666126 (+) True G95624
TU119325 other downstream 1260706 2806811 ~ 2808495 (+) True G95693

Expression Profile