RNA id: AMCG00015082



Basic Information


Item Value
RNA id AMCG00015082
length 639
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00015082
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 1678730 ~ 1682241 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCGTCTCAGGTACACATCAGCCAAAATGAACTTTTGGAAATTGACATTTGTTCACAAGTAGAAAACGACGTATTTTCTGGATTTCATCAGTGGGTTCCCGGACACAAAACCaggctgttgaaaggaaataacGACTTCGCCGATACTAACAACACAGCACGCCCGAGCCAAGACCAAGTCCCAAACACTGAGGTTAGGGACGATATGGAACATATTAATACCGAGCATCTGTACGAGGACAACGCAGAGACCAGTTTTGTTTTACGTTCATCTATACTAGATGGTCTTCTCGTTGAGCTGTATGACACTTACATCAGCTCTAGCAGGAAGAGTGTGGATAGCGTTGATAGTTCAACCGAGGCGTCCAGTTCGGAAGCCTTTCTCGGCCGAAGCAATACCGGATCAAACTTCTTACAGGAACTACTAGAGAAACACACCAGACAGCATCAAATGAAGTATCTGACCCaaaaagATATGGAGGAGCTGAAGTGGATGATTCTAGAGGTGAAATATCGAATAGGGATACAGTCAGCGAAGCTTGTCAGACAACTTAAGAGAAAGGACCGACTGCACAACAAGCTCcagaaaaacactgacattaTAACAGCATGTCTACAAGCTGTGTCTCAGAAAAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU118824 lncRNA upstream 112029 1566425 ~ 1566701 (+) True G95279
TU118823 lncRNA upstream 113488 1565035 ~ 1565242 (+) True G95278
TU118815 lncRNA upstream 135300 1540003 ~ 1543430 (+) True G95270
TU118813 lncRNA upstream 138840 1539638 ~ 1539890 (+) True G95268
TU118803 lncRNA upstream 139172 1518658 ~ 1539558 (+) True AMCG00015077
TU118847 lncRNA downstream 61301 1743542 ~ 1772882 (+) True G95298
TU118984 lncRNA downstream 303744 1985985 ~ 1995456 (+) False AMCG00015092
TU118986 lncRNA downstream 308387 1990628 ~ 2080837 (+) False G95415
TU118985 lncRNA downstream 395730 2077971 ~ 2080837 (+) True G95415
TU119033 lncRNA downstream 413634 2095875 ~ 2097334 (+) False AMCG00015096
AMCG00015080 mRNA upstream 19798 1637781 ~ 1658932 (+) True AMCG00015080
AMCG00015081 mRNA upstream 81868 1592823 ~ 1596862 (+) False AMCG00015081
AMCG00015079 mRNA upstream 132625 1545231 ~ 1546105 (+) True AMCG00015079
AMCG00015077 mRNA upstream 140194 1519240 ~ 1538536 (+) False AMCG00015077
AMCG00015075 mRNA upstream 161611 1509378 ~ 1517119 (+) True AMCG00015075
AMCG00015084 mRNA downstream 20279 1702520 ~ 1718774 (+) True AMCG00015084
AMCG00015085 mRNA downstream 43379 1725620 ~ 1742582 (+) True AMCG00015085
AMCG00015083 mRNA downstream 62454 1744695 ~ 1766702 (+) True AMCG00015083
AMCG00015089 mRNA downstream 106596 1788837 ~ 1807672 (+) True AMCG00015089
AMCG00015086 mRNA downstream 167644 1849885 ~ 1870853 (+) True AMCG00015086
TU118826 other upstream 81835 1582194 ~ 1596895 (+) True AMCG00015081
TU118644 other upstream 739744 879089 ~ 938986 (+) True G95117
TU118603 other upstream 1131985 546229 ~ 546745 (+) True G95078
TU119071 other downstream 518696 2200937 ~ 2217102 (+) True G95486
TU119235 other downstream 975244 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 982263 2664504 ~ 2666126 (+) True G95624
TU119325 other downstream 1124570 2806811 ~ 2808495 (+) True G95693
TU119344 other downstream 1138226 2820467 ~ 2823760 (+) False G95704

Expression Profile