RNA id: AMCG00015086


Basic Information

Item Value
RNA id AMCG00015086
length 4667
RNA type mRNA
GC content 0.52
exon number 22
gene id AMCG00015086
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 1849885 ~ 1870853 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCATCACTCACACCCACCGGCGCTTCTTCCACGGGCGGAGTGGTGCGGAGAGGCAGTACTGCGGCAGCGGAAGGAGACGAAGTCAGACTACGGCGGGCAGTGCGGCTCCCTGGTTACCGGTTCATTCTGTCAGCGACAGAACCCGCGGCAGTCAACCCGATATCATCGGCCACCCAAAAGaaattaagattaataaataatctccGATAAAACATATTAGATCAAGTTCCTTTCTAACCTCTTCTGCAGAAAAgaccttgtgtttttttgcagtttcaATATCTCTCATCAGTGTGAGCTCCGATTgactgttttctgaaaatatacatattttatttttattttttaaattaccgtttttttttgttttgtttttttcctcgtCGTGGTTTTCTTCGTGAGTGACAGGGAGAAACGGGAAAGACAGAAACGGTCTATCTCTCATTTATTCCGCTGATAATAACCCTGCAGCTCTTCATCACCTGAGGAAAGCCGCCTGACTGCGCCAGAATGGGGTATGGACGATCAGACAGTTACCGCGTGGCCACCACGCAGGGGGACAAGGATGAAAAGGAATCCcccaagaagaagaacaaggggAAAGATCTTGATGAACTGAAGAAGGAAGTACCACTGACAGAACACAAGATGTCTGTGGAAGAAGTATGCCGGAAATTCAACACTGACATTGTCCAGggtctGACTCTGGCCAAGGCTGCAGAGTACCTGCTCCGGGATGGCCCGAACGCACTCacgcccccccccaccactccgGAGTGGGTGAAGTTCTGCCGCCAGCTGTTTGGCGGATTCTCCATCCTGCTGTGGATTGGTGCTATCCTCTGCTTCCTGGCCTATGGCATCCAGGCCGCCACAGAGGACGAGCCAGCCGGAGACAATCTATACCTGGGTATTGTGCTGTCTGCTGTCGTCATCATCACGGGCTGCTTCTCCTACTACCAAGAGGCCAAGAGCTCCAAGATAATGGAGTCCTTCAAGAACATGGTGCCCCAGCAAGCCCTGGTGATCCGCGAGGGGGAGAAGATGCAGATCAATGCCGAGGAGGTGGTGGGTGGAGACCTGGTGGAGGTGAAGGGAGGAGACAGAGTGCCGGCCGACCTCCGAATTGTCTCTGCCCACGGCTGTAAGGTGGATAACTCCTCCTTGACTGGTGAATCAGAACCCCAGACCCGGTCACCTGACTGCACCCATGACAACCCACTGGAAACACGCAACATTGCTTTCTTTTCAACCAACTGTGTGGAAGgcacgGCCCGAGGGATCGTGGTTGCCACTGGTGACCGTACTGTGATGGGCCGCATCGCCACACTGACATCGGGGCTGGAGACGGGCAAGACACCCATCGCCAAGGAGATAGAGCACTTTATCCACCTGATCACGGGGGTGGCTGTATTCCTGGGTGTGACCTTCTTCGTCCTGTCCATCGTGCTGGGCTACAGCTGGCTGGAGGCCACTGGCACGCTGACCCAGAACCGCATGACGGTGGCCCATATGTGGTTCGACAACCAGATCCATGAGGCCGACACCACAGAGGACCAGTCAGGTGCCTCCTTTGACAAGAGCTCAGCCACGTGGGTGGCGCTGGCACGCGTTGCATCGCTGTGTAACCGGGCCGTGTTCAAGGGCGGGCAGGACGGGCTGCCCATCCTGAAGCGGGATGTGGCTGGTGACGCATCAGAGTCGGCCCTGCTCAAGTGCATCGAACTGTCCTGCGGCTCTGTCAAGGCCATCCGCGAGAGGAACAAGAAGGTCGCCGAGATCCCCTTCAACTCCACAAACAAGTACCAGCTCTCTGTGCATGAGACCGAGGACCCCAATGACAATCGCTACCTGCTGGATCAGTACCCCAAGGGATTCGCCTTCGACTGCGATGACGTCAACTTCCAGACAGACAACCTGTGCTTTGTAGGCCTGATGTCTATGATCGACCCGCCCCGCGCTGCCGTGCCCGACGCTGTGGGCAAGTGCCGCTCCGCTGGCATCAAGGTGATCATGGTGACTGGCGACCACCCCATCACTGCCAAGGCCATTGCCAAGGGGGTGGGCATCATCTCCGAGGGCAACGAGACAGTGGAGGACATTGCTGCCCGCCTCAACATCCCCGTCAGCCAGGTCAACCCCAGGGACGCAAAGGCCTGTGTGATCCATGGTACAGATCTGAAGGACTTCTCTCAGGAGCAGATCGACGAGATCCTGCGGAACCACACCGAGATTGTGTTTGCCAGGACCTCCCCCCAACAGAAACTCATCATCGTGGAGGGCTGCCAGAGACAGGCGGCCGACATGATCCTGCTGGATGACAACTTTGCCTCTATCGTCACCGGAGTGGAAGaagGTCGTCTGATCTTTGATAACCTAAAGAAGTCCATTGCCTACACCCTAACAAGCAACATCCCTGAGATCACCCCCTTCCTGCTGTTCATCATGGCCAACATCCCGTTGCCCCTGGGCACCATCACCATCCTGTGTATCGATCTGGGCACAGACATGGTCCCTGCTATCTCCCTGGCCTACGAGGCTGCAGAGAGTGACATCATGAAGAGGCAGCCCAGGAACCCACGCACGGACAAGCTGGTGAATGAACGGTTGATCAGCATGGCCTATGGGCAGATAGGTATGATCCAGGCTTTAGGAGGGTTCTTCAGCTACTTTGTCATCCTGGCTGAGAATGGCTTCCTTCCTTCCTGCCTGGTTGGCATCCGGCTAAACTGGGATGACCGGTCCAACAACGACCTGGAGGACAGTTACGGCCAGCAGTGGACCTATGAGCAGAGAAAGATTGTGGAGTTCACGTGTCACACTGCGTTCTTCGTCAGTATCGTGGTGGTGCAGTGGGCCGACGTCATCATTTGCAAAACTCGCAGGAACTCCGTCTTTCAGCAGGGCATGAAgaaTAAGATCCTGATCTTCGGGCTATTTGAGGAGACAGCTCTGGCTGCCTTCCTGTCCTACTGCCCCGGCATGGATGTGGCTCTCAGGATGTACCCTCTTAAGCCCAGCTGGTGGTTCTGTGCATTCCCCTACAGTTTCCTCATCTTTATTTACGACGAAATTCGAAAACTCATCCTGCGCAGGAACCCCGGAGgttGGGTGGAAAAGGAGACCTACTATTAAATTATCAAACAATTTTCAACTCATCCACCCTGCCTCCAATCCAGCgccaccctctccctccctccctctatctatctatctctctatctccccATTCTCATTTTTGTTTCACTCACTTCACTTCATCCCTCTTAACACACAAGCACCCCCCCGCCCCATCTGCCTCCCCCCTCcagagaaaaagcaaaaaatggaaacaaacgAGCACATGGCAACAACCTCCCCCTAATCTGCTCCTCCCTCCATCCCGCTCTGACAAAGAGAGGATAAGAGGCGAGAGAGAAAGTGACAAGTAGCAGACTCCTTACAGGAGAGCTGTGCACCCGTCCCTCTCTCAGCCTCTCAGACAACATCTTTGTCAGTCAGAAATAGCAGGGGCTGGTATCCGACCCTCCCCCCTCTGAACGCAATCATGGTGTTGGAGCGGCCTGGAAAGACATCACTCATACCTTCTCTGCAGGAACATGAAGCCGAGAGAGCGAAGACTGGCAGTTTccgagggtgagagagaggggggggcagTCGGAGCTGAGCGGCGAATGGAGGCCATCTAGTGGCCGAGCGACGAGTGACCACTTACTGTGACTCTCCTCAGACTGtcctctcctcttccctccttccctccctgctcgactctccctctccctccgtTCATCtcctgctccctccctctcctccccctcagTCCCAGTGGCAGGGGAGCCCACAATGGCATCCCCCATCCTCCCCAGTTCTGCGAAACCTTGTTTTGCTGCTGGTTGAGATGAGAGGGGGCACACAGTCCTCTGTCCCCATTCTTACTGACTCGCTCTGTTTTACCTGGGGGagagaaatatgtttaaatgtatttattaattattcttgGGGTGGGCATATGAAAGCTGCTCCCTCCATTTAGACATGACAAAGCACCCTCCACCCTCtctatttctttctctttcactcccctcctccacccaagtgtctgtctgtctgtctgtctgtctgtgtgcaccGTGAGAATCATTGTCCCTTCTCCGCCTTCTTTGCCCCGTTAATCAATCTCTCTGTGTTCTAGGAAAATATTTCTCTTTGGTttcattaagaaattaaaaaaaaaaaacaatacaaaaacatgggggaaaaaagacaaaaataacttattgaacaacaaagaaaaacaaacaacgaACGAATgaacgaaaagaaaaaaaaatcttattttttctgtggtttCAATCTATTTTGCCGGGTTTTCAGAGGGCCACTATAACTGCGAGGAGaagcaaacaagaacaaaatgacaacactggctattgtaaaaaaataaattaaaaaaataacagaaacattgttgttattattatcaatacTTCTACTGATGTGAATAATGCTGCAGTTGTTAGTTGTCTGTGCATTTGTTTGCGGGTGCAGGGAGGACAGACACCCCCTGGCCACAGGGAGAGGGGCAGCGTGGCACAAGGAGAAACAAGAATCCATGTCAAAAAGAAACGAAACCGACGTCAATAAAAATCTAGAACATTTAATACAA

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0007626 locomotory behavior biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118847 lncRNA upstream 77003 1743542 ~ 1772882 (+) True G95298
TU118824 lncRNA upstream 283184 1566425 ~ 1566701 (+) True G95279
TU118823 lncRNA upstream 284643 1565035 ~ 1565242 (+) True G95278
TU118815 lncRNA upstream 306455 1540003 ~ 1543430 (+) True G95270
TU118813 lncRNA upstream 309995 1539638 ~ 1539890 (+) True G95268
TU118984 lncRNA downstream 115132 1985985 ~ 1995456 (+) False AMCG00015092
TU118986 lncRNA downstream 119775 1990628 ~ 2080837 (+) False G95415
TU118985 lncRNA downstream 207118 2077971 ~ 2080837 (+) True G95415
TU119033 lncRNA downstream 225022 2095875 ~ 2097334 (+) False AMCG00015096
TU119049 lncRNA downstream 259885 2130738 ~ 2131893 (+) True G95464
AMCG00015089 mRNA upstream 42213 1788837 ~ 1807672 (+) True AMCG00015089
AMCG00015083 mRNA upstream 83183 1744695 ~ 1766702 (+) True AMCG00015083
AMCG00015085 mRNA upstream 107303 1725620 ~ 1742582 (+) True AMCG00015085
AMCG00015084 mRNA upstream 131111 1702520 ~ 1718774 (+) True AMCG00015084
AMCG00015082 mRNA upstream 167644 1678730 ~ 1682241 (+) True AMCG00015082
AMCG00015087 mRNA downstream 10391 1881244 ~ 1886142 (+) True AMCG00015087
AMCG00015090 mRNA downstream 61557 1932410 ~ 1940759 (+) True AMCG00015090
AMCG00015092 mRNA downstream 124465 1995318 ~ 2021856 (+) True AMCG00015092
AMCG00015096 mRNA downstream 220822 2091675 ~ 2103854 (+) True AMCG00015096
AMCG00015095 mRNA downstream 246167 2117020 ~ 2137284 (+) True AMCG00015095
TU118826 other upstream 252990 1582194 ~ 1596895 (+) True AMCG00015081
TU118644 other upstream 910899 879089 ~ 938986 (+) True G95117
TU118603 other upstream 1303140 546229 ~ 546745 (+) True G95078
TU119071 other downstream 330084 2200937 ~ 2217102 (+) True G95486
TU119235 other downstream 786632 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 793651 2664504 ~ 2666126 (+) True G95624
TU119325 other downstream 935958 2806811 ~ 2808495 (+) True G95693
TU119344 other downstream 949614 2820467 ~ 2823760 (+) False G95704

Expression Profile