RNA id: AMCG00015087


Basic Information

Item Value
RNA id AMCG00015087
length 2043
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00015087
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 1881244 ~ 1886142 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGTTGTTCGTAGGCCGATACACTCGCTGTACTGGGACGAGACGGAGTGTCTGAACTATTACGGGATGCAGTCCCTCCACGAAGTCTACGAGGTCGTTGGCTCTCAGTTAACGGAGACCGATGTGGAGGTTTTGTCTTTTCTCCTGGACGAGACCCACCAGGGCTTCCACCCTCTCGACCCAGCTGGATGGACCCCGGAGTTCTGGGATGAGAGCGCTAACGGCGGTGTGTCCCCAGAGCGGGTCACTGCCCCGCCTGTTGTAGACTGCCAGCAGGAGGGAGTGCTGACCTCCAGCTCTGACaaggtggggggggagaggcagaCCCCCTCCACCTGTACACAGGAGCAGTGGAGGGcagATATCCGCCTGCGTGTGCGTGCAGAGTACAGTGACCCCGAGGCGGCGCTGCGGGGGGGAGGCGTCTGGTCTGCGCGGCTGCAGCCCCTGGAGCGCCAGTTCGACCTGTTTTCGCGGGCTATATATGTGCTGCGCGCCCGTGACCTTGGCGCCGTGGTCTGCGACATCAAGTTCTCCGAGCTGTCCTACCTGGATGCCTTCTGGGCCGACTACCTGAGCGGGGCACTTGGAGCAGCCCTGAGGGGTGTGTTCCTGACTGACGCCCTGCGCCGTGCTGTGGGCTCCCAGGCTGTGCGCCTGCTGGTCAGCGTGGACCAGGATGACTACGAGGAAGGCCgcaggctgctgctgcagggATTGGCTGTAGCAGATAGAGGGGAAGCCTTCGTTCTGCTGCTGCTCATGCTGTTCCAGCACTGTGTCACTCTCACTCCTCTTCCTAGGCCTGCACTTGTGCACGgttctGACCAGGCTGTGTTGTTCAGTGATTGAGTGATGAAGGGGAAACTTGAGTCCTgagccctgccctgccctgccctcccCCAGTGTAGAGAGAGACACATTCAAGTTCAGGGCAGACAGACACATTGCAGTCAGCTGGGCTGCTCACACTGTGGTACAGCTCAGTACAGCGGCTGTCTGTTCATCTGTCCTTTTGGCTGGCTGTTACTGTTCCTTTCTGTGTAcacctctccctttctctgcctctctctgtgtggagATGAGATTCTCTGGGCAGTCAGACCTCAGTCACCCCtctgacccccccacccccaagaaGATCCAGAGAATCCAGGTGCTGtttgttgttatgtttttattgtcattattttttaattatttaattatttggatCAAAGTGGAAGTAGTTTTTTTGCTTACAGGCCCTCTCACTCTTCTGGACTGGGCTTTACTGTGTACTGTTTTGCACTGAACTGCAATGTGTGGTGTACTGGGCTGGACTATGTGCTGTACTCTACtgcataatacagtgcagtccTCTACCGTCCAGGGCTGTCCcctacagtgcagtacagtttgTAGCCCAGTACAGTGCACATTGGAGTGCAGTTTAGTGAGACAGTTTTGAAGGAATATCCCACACAGATTCGTCTGCACCAGGtcttaaagagagagagagagagaggcatactgcaagagaggagaggaacATCTGAATTAACTTTTTCAGGGTTTTCGCACTTCCCCCTAACACGTGCACACTCCCTCTGACACAAGGGAGAACCACTCCCTCTAACAACAGACACGCACACTCTGACATacgtatgcacacacacacacgcacactaactcagacacacacactaactcagacacacacactgattgtACACAACAGATCTGTCTCCCTGTCACAACTGGCCACTACTGCATTAGGGCACAACTAGAGACTAATGTGTCTTAAGGACTCTGGTGTCGGCAGGGAGGCACGGCTGTGTGTGGATATTATCCAAACTGtctgatgaagaaaaaaaaaaccttctagTTGGTAACTAGGCTGTGTaaagttaattatatacatacaaaaaattaagttaagaaacaaaacagtgttgaaatgtgtgaattactttgttttgttcttttctttgttggaaagttctgatttaatatatttgtgaaaaGAGAACATGGTTTATAATAAAGGTttgtcagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118847 lncRNA upstream 108362 1743542 ~ 1772882 (+) True G95298
TU118824 lncRNA upstream 314543 1566425 ~ 1566701 (+) True G95279
TU118823 lncRNA upstream 316002 1565035 ~ 1565242 (+) True G95278
TU118815 lncRNA upstream 337814 1540003 ~ 1543430 (+) True G95270
TU118813 lncRNA upstream 341354 1539638 ~ 1539890 (+) True G95268
TU118984 lncRNA downstream 99843 1985985 ~ 1995456 (+) False AMCG00015092
TU118986 lncRNA downstream 104486 1990628 ~ 2080837 (+) False G95415
TU118985 lncRNA downstream 191829 2077971 ~ 2080837 (+) True G95415
TU119033 lncRNA downstream 209733 2095875 ~ 2097334 (+) False AMCG00015096
TU119049 lncRNA downstream 244596 2130738 ~ 2131893 (+) True G95464
AMCG00015086 mRNA upstream 10391 1849885 ~ 1870853 (+) True AMCG00015086
AMCG00015089 mRNA upstream 73572 1788837 ~ 1807672 (+) True AMCG00015089
AMCG00015083 mRNA upstream 114542 1744695 ~ 1766702 (+) True AMCG00015083
AMCG00015085 mRNA upstream 138662 1725620 ~ 1742582 (+) True AMCG00015085
AMCG00015084 mRNA upstream 162470 1702520 ~ 1718774 (+) True AMCG00015084
AMCG00015090 mRNA downstream 46268 1932410 ~ 1940759 (+) True AMCG00015090
AMCG00015092 mRNA downstream 109176 1995318 ~ 2021856 (+) True AMCG00015092
AMCG00015096 mRNA downstream 205533 2091675 ~ 2103854 (+) True AMCG00015096
AMCG00015095 mRNA downstream 230878 2117020 ~ 2137284 (+) True AMCG00015095
AMCG00015102 mRNA downstream 331549 2217691 ~ 2227951 (+) True AMCG00015102
TU118826 other upstream 284349 1582194 ~ 1596895 (+) True AMCG00015081
TU118644 other upstream 942258 879089 ~ 938986 (+) True G95117
TU118603 other upstream 1334499 546229 ~ 546745 (+) True G95078
TU119071 other downstream 314795 2200937 ~ 2217102 (+) True G95486
TU119235 other downstream 771343 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 778362 2664504 ~ 2666126 (+) True G95624
TU119325 other downstream 920669 2806811 ~ 2808495 (+) True G95693
TU119344 other downstream 934325 2820467 ~ 2823760 (+) False G95704

Expression Profile