RNA id: AMCG00015090


Basic Information

Item Value
RNA id AMCG00015090
length 468
RNA type mRNA
GC content 0.64
exon number 3
gene id AMCG00015090
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 1932410 ~ 1940759 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTTAACAATAATGGAACATCGCATTTCAGTGAAGATGGAGGAGTGCAGTGAGACGTCTCCTGCGCCGCCCCCGGCTCCCCCCGCACCCCCCTCGCAGACCCAGAGCCACCTGCCCCAGACGCAAATCATGCTTGCAGGCAGTCAGCTGGCTGGGAACCAGAAGCCTACCTCAGAGGAGATCCTGCTGATCGCGGAGCAGCTGCACATGGAGAAGGAGGTGATCCGAGTGTGGTTCTGCAACCGACGGCAGAAAGAGAAACGCATCAACCCTGCCAGCGCCACCCCCCCCCTGCCCAGCCAGCCCCCCCCGCCGCACAAACCCCCCTGCTACAGCCCGCACATGGTACGGCCCGCACGCTGCACGACACACTCACCCCACCCCGTCCCCCTACCCCCCTGCAGGCTGCACCTGATCTCTCCTGCACGCCACCCCCTCGTCACCTCCCCCCGTCCACACCTGTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118847 lncRNA upstream 159528 1743542 ~ 1772882 (+) True G95298
TU118824 lncRNA upstream 365709 1566425 ~ 1566701 (+) True G95279
TU118823 lncRNA upstream 367168 1565035 ~ 1565242 (+) True G95278
TU118815 lncRNA upstream 388980 1540003 ~ 1543430 (+) True G95270
TU118813 lncRNA upstream 392520 1539638 ~ 1539890 (+) True G95268
TU118984 lncRNA downstream 45226 1985985 ~ 1995456 (+) False AMCG00015092
TU118986 lncRNA downstream 49869 1990628 ~ 2080837 (+) False G95415
TU118985 lncRNA downstream 137212 2077971 ~ 2080837 (+) True G95415
TU119033 lncRNA downstream 155116 2095875 ~ 2097334 (+) False AMCG00015096
TU119049 lncRNA downstream 189979 2130738 ~ 2131893 (+) True G95464
AMCG00015087 mRNA upstream 46268 1881244 ~ 1886142 (+) True AMCG00015087
AMCG00015086 mRNA upstream 61557 1849885 ~ 1870853 (+) True AMCG00015086
AMCG00015089 mRNA upstream 124738 1788837 ~ 1807672 (+) True AMCG00015089
AMCG00015083 mRNA upstream 165708 1744695 ~ 1766702 (+) True AMCG00015083
AMCG00015085 mRNA upstream 189828 1725620 ~ 1742582 (+) True AMCG00015085
AMCG00015092 mRNA downstream 54559 1995318 ~ 2021856 (+) True AMCG00015092
AMCG00015096 mRNA downstream 150916 2091675 ~ 2103854 (+) True AMCG00015096
AMCG00015095 mRNA downstream 176261 2117020 ~ 2137284 (+) True AMCG00015095
AMCG00015102 mRNA downstream 276932 2217691 ~ 2227951 (+) True AMCG00015102
AMCG00015100 mRNA downstream 310781 2251540 ~ 2252833 (+) True AMCG00015100
TU118826 other upstream 335515 1582194 ~ 1596895 (+) True AMCG00015081
TU118644 other upstream 993424 879089 ~ 938986 (+) True G95117
TU118603 other upstream 1385665 546229 ~ 546745 (+) True G95078
TU119071 other downstream 260178 2200937 ~ 2217102 (+) True G95486
TU119235 other downstream 716726 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 723745 2664504 ~ 2666126 (+) True G95624
TU119325 other downstream 866052 2806811 ~ 2808495 (+) True G95693
TU119344 other downstream 879708 2820467 ~ 2823760 (+) False G95704

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000319_05269495_05286542.mRNA True 2167 mRNA 0.54 14 CI01000319 5269037 ~ 5286622 (-)