RNA id: AMCG00015092


Basic Information

Item Value
RNA id AMCG00015092
length 7698
RNA type mRNA
GC content 0.64
exon number 20
gene id AMCG00015092
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 1985985 ~ 2021856 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aTGAAGCCACTGAGAAAACAGGGGGGACGCTCTCCTCCATCCACCAGAGCGAAAGGAGGGAAGAGGCGGGGCACCACGGAGACGAGTGtggaaggggagaggagagagaggatgagggagagggagagggagagggagagagagaccaccGAGAGACAGGCCCCAGCCCCACCCCCGCACTCATCGCCACGGAGGCACAACATCACagcccctgccccctccccctcccaggGAGAACTGATTCAGAGAGGAGGAGTGGCCTTTGAGGGGGAAGGGCCAGATAGGACGGGGCTGGGGAAGGTGGTGGGGAGAGAGGAAgctgaggggagagagggggaggaggaagagaaggagagcaGGAGCAGGTGCGAGAGCGGCAACATCAGCGCCAACAATGGCAACAACACAGTCAACACAGTCAGCGTGACACAAGCCAACACAAGCAACCAGCCAGCCAGCCGCAAGACTGCAACCTTCAAGTCCAGAGCCCCcaagaaaaaatacacttaTGAACACTGTGTGGGGCTGGCAGGGGtggcgggggtgggggcggCAGGCAGCCCTCCTCCCcccatcagcagcagcagcactaacTATACATCCAGCATGAGTATGGCCACTGCTGGGCCCAGCGACAGCACAGAGCCCCAGAACAACAGcaccagcaacaacaacagcaacaacaacaacaacaacaacaacagccaagATAGCAGCAATGACAGCCCCAGTAATGAGCCTCCTCCCGGCACTAGTGATGGGGGTGGGGCGGAGGTGGAGGGCgaggcagagggggagggggagggagccccaAGCTCAGTGCGCTCTTCCTCCACAGACACCGCTAGCGAGCACTCCACCGACCTGGAGCCCCCCCGCGCCCCGGCCCCGCCCCCCAGCCAGTACGTTGTTGACACCCTGTGCAGGAGGATACAAAACCAGAGGGTCCTCGCCAGGCTGAGGGACAGAGTGAGAGGAGAGTGGGGGAGGGAAGGACAACAGGGGCTGAAAGAGGGTGAGGGAGcaagggaaggagggaggagggacAAGGACAATGAAGGCAGAGACAGTGCCATTAAACCGACCTCTGTGCTGTTCTGCACTGGGACGGTGCAGGGGGCGATTGTGGAGTCAGAGGTCCTGGCAGTGCAACTTTTTGGAGAGAAGGAACCCCAATTCTACTCAATCCCCTTCCCCTCCTCATCCCCGTTCCCAGGTGGGATGGCGCACACCGGggctgagagagggggagaaggaaGGACAGGGGTAGGGGTCGACTTGATTCTGGACAGCCCCCCTCCTGGCCTGGACCCTGTCGCTGTGGGGACCAGGGTGTGCGTGCCACTGGGCGGGGTTGGGGGGACTGAGGAGGCAGGAGTTGGGGCCCAGCTATACAGGGAAGGGGTAGTCTCCCAGTTTGACCCCCATCCAGCTGTCTCCTTCCCCTACCGCGTCACTCTGtgcgaggaagaggaggaggaggagggtgaggaggagagggagggagcagggCAGATGAGAGATGCAAGAGgcggaggggaggagggggaggacaGCCAAGAGGGAGAAAgtagggaggaggaggggggtgcTCAGGAAGGGGATGAGAAGAGAGGAAGGACGGGGAAtggaaagagggggagggggaggaaggtGGGGTTCCGCAGGCGGCTGAGCTCTGAATCCGTGTGGGTGTCCCGGAAAAGCTTgcgtctctttctctctccctgggaTGCCCCGGAGCTGGGGGGAGcgagggagcgggagagagagagagagagagacagggagagagagagggaggagagggagaggagggaggagatggagagggagagggagagacagatgcAGGCCCACCACAAACATCAGATtatacagcagcagcagccccccccGCCACCTCCCCACCATGAAGAGGACGTGGAAGTGTCCCGCTTCAGCCTGGGGGGTGGCAAATTGGGGACGATAGgggcaggaggaggaggtctcggaggagggggagggagcagcCACTCTGTGGGGCTGCCCCTGGGCCCGGGCGCTCACTTGCCCCTTTGCACCCTGTCCAGTCTGGGCCTTAccacttcctcctcctcctcctcctcctcttcctcagccTACCCCtcgccctctccctcctccactGTCCTGTGCCCGGATTCTCTGGTTGcccacccccactcccacccCCATGCACTGCCACACCTCCATTTGCAAccgcaacaacaacagcagcagccgcCATCACAGCCCACTTCCTGTCCGGCCTCCACCACTTCCTCACCGGCACCTGGCAGTGGCCGGAGCAGCGTGAGCCTCCTCTCATTGGACAAGGGCTCTTTGGCAGCAGGAGGAGCTGCGATCggccctgcagcagcagcaggaggaggcgCTGGaggtagaggaggaggaggaggaggaggaggaggaggggggggtggcTCAGGTTCCACCTCCTCGTCTTCCTCGTCCTCGCGCTCACGCACGCCCCTCACGGCCGCCCAGCAGAAGTACAAGAAGGGCGACGTAGTGTGCACCCCCAATGGCATCCGCAAAAAGTTCAATGGGAAGCAGTGGCGCCGGCTGTGCTCACGGGAGGGTTGCATGAAGGAGTCCCAGCGGCGTGGCTACTGCTCCCGCCACCTGTCCATGCGCACCAAGGAGATGGAAGGtgctggggggggaggggacAGGGAGCGAGGGGACAGGGGCAGCAGCTCGGGAACTGTGACCCCCTCTGACCTGGGCCGAGGGGTTGGGGGCCGAGCGAGCAGCGAGTTGGAATGGGACGAGACATCACGGGAGTCCAGCGAGGCCAGCTCCCGTGGGGGTGACTCACGGCCACGACTGGTATTGCCCTCCTCCAGCAGTGCCACCCTGCTGGCCACACAGGATCTGTCACGCTTCGACTTCGACGAGTGCGAGGCGGCCACCATGTTGGTGTCCCTGGGCAGCTCGCGCTCGGGCACCCCCTCTTACTCGCCCGTGTCCAACCAGTCGCCCTTCTCCCCCgcaccctccccctccccctccccactctTCGGGTTCCGCCCCGCCACCTTCTCCCCAATCACTGCTCCCCCACCGCCACCCCCTGCCACCCGCCGTCACCGTCACCAGAGCGGCACCGCCCCCGTCTCCGTGGCTACACCCAAGCTGGGGGACCGCGAGCGCGAGCGGGAACGCCACCCCTCGGGGCTGCTGACCTCCTTCATGGTACCCATGAGCCCCAGCAAGCGCAAGCCAGACGCCCCCCCCTTGCCTGCCGCCCCCTCGATGGactctggggtgggggggggcgacACCAGTGAGACGTTCCGGGTGCTCTCCCCACTGGCACATGCCCAGGCCGGTGGTGGTGGGCTGTCATTCCCTCGGTCCCGGCTTGGTGGTGCAGCGCCCCCCCCTCTGCTGCCACCCCCTGCCTCCTCCTGCTCTGCCCTGTCCACACCGCCCTCCTCCTCACCCCCTCCTCTGCTGGTCTCCCACACCCCCCCTGGCTCGGCCGCCATAACCTCTGACCCCAGTGTGCGCAGGGTTGCCACCGGCAACGCCTCCCACactcacccccccacctcctcctcctcccatcaGCCACTGCGAGACTCCCCCGTCATTGTCAGGAACCCTGAGGTGCCATTGATCAAGTTCACAGAGAAGCCACTGGCTCGAGGGGGCTCTGGGGGGGGACTGGGAGGAGTATGGACAAATGTGGAGCCCCGGTCAGTGCCTGTATTTCCCTGGCACTCACTGGTCCCCTTCCTGGCTCCCAGCCAATCGGATACCTCCATCCAGTCTTCCGAGGGACAGCAGCCTGTCAGTCACCCCCTACCAGTCAATCAGAGCAAAGacgctcagtgcagtgtggtctCAGTGAATGATGGCAGTGCCCCCCCCTCAGCCCTGGATAGAGCACCCCTTCCTCGCCCTGCCCCTCTCATCGAGGAGCCCCTCCCCGAGAGGGACaggagcagggagagggagagggagcgggaaAAGGACAGGGaacgcgagagagagagaggagagcgggagagggagcgcgagagggagacagagagagagcgagagaggggggACAGTGAGACGGAGAGCGACGTAGACGACCCGTTTTTCCCAGGTGTTCTACCGGACGCCCCCCTGACTGTCTCTCCAGTGAAGAGACGCACCCAGTCCCTCAGCGCACTGCCCAAAGACAGTGACAAGAACAGTCCTGGGAAGAGGGAGAAGGATCATATCCGGAGACCCATGAATGCCTTCATGATTTTCACACACCCAGATTGGAAGTGGTGCAATAAGGACCGGAAGAAGTCCACATCCGAGGGGAAGGGGGTGCTTGGGGGGCCGGGGGCAGGCAAGGAGACCAGGGAGAGGAGCATGTCAGAGACCACAGAGCCTCAGTCGCTGGCTTTGGGGGCGGAGCTGAAGGCAGGGCAAGGTGTTGTGGGTGTAGCAGAGAGGGTGCTAGGGGAGGGGCCTGTCGGTCAGCTGACCCGGCCACGGGCGTTCTCCCAAAGTGCCGTGCACAGCCTGGAGAGGAgcgagcgggagagagagagggagagggggaacaCACAGGCACTTGCAGAACTGGCCCAGGTAGTGTCccgatGGCGCCACCCTCCACGGCGCACTCTCTCGCAACGTGGGCCAAGTGAGGAGGTGACCAGTGACGAGGAGAGGATGGTGATCTGTGAGGAGGAGGGAGACGACGATGTCATCGaGGATGGTTTCCCTGGTGGCTCTATTGATCTGAAGTGTAAGGAGAGAGTGACGGACAGTGAGAGCGAGGCTGGCTCAGGTGACGAGGCGGACGGCAAGCGAGTTTTTGCTCCAGTGatctgctcttcctcctcctctccatccATCTCCcatcctctctcctcctctctgggGCGTGGTTCCGAGCCCTCGGCCACCACTTCTGCCCCCACCCGcagctcctccctctcctcctacTCCCCTGCCAAGCGGCCAGGAGAGGGGGGAGGCAGCTCggacaggaagaggaagagggggatggatagtggaggaggaggaggaggaggagcagggggagggggagtgaGCAGCTCATCCCTCGTTCTCTCGTCCTCTGCCAGTCACTCATCTGTCATTGCCAGCTCGCAAGGTGTCACGATGTCCAGCCCACCAATTCACAGTAGTAGCAGCGGccataacacaacacaacaacagcagctaCTGCTCCACTCCGGCCGTACCCCCCCCAAGCAACTGCCTTCCGCCACACACCACCAGACCCTTGGCCTACCCCTGctaggggtgggggtgggtgcAGTCCGGGTGGCATCCACTGTAGTAACCAATGTGGTAAAGCCGGTGGTCAGCAGCCCCGTCCCCATTGCCAGCAAGCCCTGCCCTTCCCGAGAGGCAGTTAGCCCCGCCCCCTCCACGGCTCCCCAGGACAAGAAACCACAGCAGATGTCAACAATGCCACTGGGGAGCCAGCACATGCAGACACAGCTCCTGATTGGAGGAGGAGTAGGGGGCGGGCACTACTCATCCTCCTCGTCTGTCataggtggaggaggaggaggtgggggaggagggggtggtgtGGTGACTAATCTGTTGCTGGGCAGCACCTTCCCTGTCCCCCCCACTGTGCAGCTCatcacacagcagcagcagcagccccccccACAGCCGGCCTCCATCTCCAACATCAACACAAACAATGCCATCTCAACAAGCACCCACAGCAGCGGCCCTGGCCCCCTGCCCCTTGGTCTGCTACAGCCCCAGTTCATACCTGCCCCGGCTGCACTAACCACCCCTTGTGGCAACAAAGCCATCACACAGGTGCAGTACATCCTGCCCAccctctccccccaccccaagagcccctgcccccaccccctccaccagTCACAGcctccccagcagcagcagccccagccAACTGGCATCCAGTTTACCCTGCCTGCTGCCCCGCCCTCCCTTGGCCACCCCACCCACCTGCAGGGCCCCGCCTACGCTTCCTCAGCTAATGGGAAAGCAACCGTGGTGaTCATCCAAATCGCTCCTATGCCCGTTGTCCAATCACCGCTTTCCTCTGGAGGAGCAGTGCACCCAGGGAGCCCCTTCCCCGTCTCCATGGGAACGATGGCACCAGGCTCCGCCCCTTCGCAGACCGTGCTGCTGCCTCCCCCAAACACCAGGATCACCTATGTCTCCACGACGACGGGCTCCTCCCCCCAGCAAGCCCCTCCCCCTCCGGGTTCCACTTATGTTCCGTCGCCCCTGGCTACGCTGGGGTTCACCGCCATCGCACCATCTGGGCCAACGCTGGTACAGCCACTGATAGCAGcAGGCAGTGTGTCGGTCACCCCTAAACAGcagcccctgccccccccagtCCTGGCAAGGACCCAGAAGGTGGTGAAGGCGACTGTGGCCAACATCCCAGTGGGCAGCTTTGAGGGGGGGAGCAGCCGGGGGAGCCGTGcagagagggagcgggagagggagcgggagcgggacagggagagagagagggagcgagactGTAACAGTAATAGCAGCGGCAGCACCAGCAGCATGAATCGATTTTCCTTTGATCCTGAGCGCTGTCCGGACCCCAGCACTCCCCCCCATGGAGAGGACAGCCCACCTGACGACAGAGGGGGCAGCTACCCCCCGGAGGGGCAGAACAGCATGGACGGGGGCTCAAAAGGGGGCAAGGAAGGGGCAAGTGGAAATGCAGCAGGGCAGGCTGGTTGGAGAGattctctcccctcctcccctctgcCGCCCCCTTCAGGGCCAGacacccccctgccccccccacatcCTGACAAGGATGCCCCCCCGACAAAGAAGGTCAAAGTTCGTCCCCCACCTCTCAAGAAGACATTCGATTCTGTGGACAAGGTGTTGTCAGAGGTGTATTTTGAGGAGCGTTTTGCGGAGCTGCCAGAGTTCCGCCCGGAAGAGGTGCTGCCCTCCCCCACTCTGCAGAGCCTTGCCACCTCCCCCCGTGCCATCCTGGGCTCCTACAGGAAAAAGAGGAAGAACTCCACagACCTGGATTCATCCACAGAGGACGCAGTATCCCCGAAGCGCCGGGGCCGACGCCGCTCCAGCTGCAGCTCGGAGCCCAACACACCCAAGAGCGCCGCCAAGTGTGAGGGCGATATCTTCACCTTTGACCGCCCAGGTAACCCCGAGGCCCGCACCAAAACACACTGCCCAGCACTGGGGACAGACTCTGAGGATATCCTGGGGGAGCTGGAGTTTGACAAGGTGCCGTACTCATCTCTGCGGCGCACGCTGGACCAGCGCAGAGCCCTCGTGTGCCTGCAGCTGAAGATCCGTGAGGTGCGCCAGAAGATCATGCAGACGGCCACGCCCACCGAACCATGCGGGGGAGGAGCACCAGACATGGGGGGGGCAGGAgtcggcagcagcagcagtggcagcagcagcatgacctcctccctttctttctccctcgCTCTGCAcggcccccccacccccaccccggccccggccccggccccggccccggccccgGCCTCTTCTGCTGCGGAGGGGGGGAATGTCTCGGTGACGGCCACTGCCCCTGCCTCGGCCAGGGAGCTGGAGGGGGAgcgggagggggagagagagcgggagcCAAGTTCCGGCGAACACCCTCTGGGGGTACCGGACCCCCGAGACTATGGGAGATGA

Function

GO: NA

KEGG:

id description
K20225 CIC; capicua transcriptional repressor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118847 lncRNA upstream 222436 1743542 ~ 1772882 (+) True G95298
TU118824 lncRNA upstream 428617 1566425 ~ 1566701 (+) True G95279
TU118823 lncRNA upstream 430076 1565035 ~ 1565242 (+) True G95278
TU118815 lncRNA upstream 451888 1540003 ~ 1543430 (+) True G95270
TU118813 lncRNA upstream 455428 1539638 ~ 1539890 (+) True G95268
TU118985 lncRNA downstream 56115 2077971 ~ 2080837 (+) True G95415
TU119033 lncRNA downstream 74019 2095875 ~ 2097334 (+) False AMCG00015096
TU119049 lncRNA downstream 108882 2130738 ~ 2131893 (+) True G95464
TU119079 lncRNA downstream 195344 2217200 ~ 2218096 (+) False AMCG00015102
TU119080 lncRNA downstream 195344 2217200 ~ 2218096 (+) False AMCG00015102
AMCG00015090 mRNA upstream 54559 1932410 ~ 1940759 (+) True AMCG00015090
AMCG00015087 mRNA upstream 109176 1881244 ~ 1886142 (+) True AMCG00015087
AMCG00015086 mRNA upstream 124465 1849885 ~ 1870853 (+) True AMCG00015086
AMCG00015089 mRNA upstream 187646 1788837 ~ 1807672 (+) True AMCG00015089
AMCG00015083 mRNA upstream 228616 1744695 ~ 1766702 (+) True AMCG00015083
AMCG00015096 mRNA downstream 69819 2091675 ~ 2103854 (+) True AMCG00015096
AMCG00015095 mRNA downstream 95164 2117020 ~ 2137284 (+) True AMCG00015095
AMCG00015102 mRNA downstream 195835 2217691 ~ 2227951 (+) True AMCG00015102
AMCG00015100 mRNA downstream 229684 2251540 ~ 2252833 (+) True AMCG00015100
AMCG00015103 mRNA downstream 237340 2259196 ~ 2259829 (+) True AMCG00015103
TU118826 other upstream 398423 1582194 ~ 1596895 (+) True AMCG00015081
TU118644 other upstream 1056332 879089 ~ 938986 (+) True G95117
TU118603 other upstream 1448573 546229 ~ 546745 (+) True G95078
TU119071 other downstream 179081 2200937 ~ 2217102 (+) True G95486
TU119235 other downstream 635629 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 642648 2664504 ~ 2666126 (+) True G95624
TU119325 other downstream 784955 2806811 ~ 2808495 (+) True G95693
TU119344 other downstream 798611 2820467 ~ 2823760 (+) False G95704

Expression Profile