RNA id: AMCG00015100


Basic Information

Item Value
RNA id AMCG00015100
length 1194
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00015100
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2251540 ~ 2252833 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGAGCACCTATATTTCAATGACTCAGACAATTACACCTACTACCACACCTACCACACCAACTGCTGGTTCAGCAGATGGGACTGGTGTAACGATGAGGACAGCCTGCGCTTCGAGGCCCTCTTCCTGCCAACCCTGTATGCCCTGGCACTGCTGCTGGGGCTACCAGGAAACGTGCTCATGCTGGCCATGCTGTTTCGGCAGCACCAGCCCTGGAGAGGGACAGACGTGTTTGTGATGAACCTGGCACTGGCTGACACCCTGCTGGTCATCACACTGCCCCTGTGGGCGACCCAGGCGGTGTGGGGCTGGAGCTTCAGAACCCCTTTGTGCAAGATAGTGGGGGGGGTGTTCAAGgtgaacTTCTTCTGTTGCATCTTCCTGCTGACCTGCATCAGCCTGTACTGCTACCTGTCCATTGTCCACCACATGCACTTCCACCCCCGGCAAGTGTGGGGCGCATGCCTGTCCATCTGGCTGCTCGGCCTCCTCCTGTCCATCCCTGACCTGATTGTCCTGGAGGCCGGGATGCCTGAGCAGTGGGGTGGGCGAACCAAGTGCATCCTCCACTATGAGCACCCCTGGGAGTCCTGGGGCATCACCGACTGGCAGTTCGTCTGCCGCCTGTTATACCACGTGACCAGCTTGCTGCTGTCCTTCGCCATCATAGGCTTCTGCTTCATCTGTGAGCTGAGGAAGAAGGACGGTGTTCAGATTCACGGGATCATGCGCAACATTTTTAGGTTAGTGCTGGCATCCTTCCTATGCTGGCTGCCCTATAACCTGACCTTGCTGGTGGACACACTAAACTCCTGGCTGGACTTCATTCACACCTGCAGCAGCAGGTTGGCTCTGGACACATCTCTGGTGGTCACCTCCGCACTGGCATCCCTGCACTGCTGCCTCAATACACTGCTGTATGCTTTTTTGAGGAAGAAGGTCCGCTCCCACCTTCAGGGGCTGCTGCGCTCCATGGGCTGTCCAGGGGTCCAGGCGAGGGGTCCGAAGGAGCCCCAGGCAGAGCTGGCCAGCACCTCCAACTGCACCTACATGGAGTGGTATTGTGAGTGCAGGGTTAGCATAGAAAGAGGGGATCAAGGAGAGAGGCCTGAGTGGAGAGGAGGGAGTGTGGAAGAGAGGGATGGGAAGAGGGGGACCGATACAGAGAACAATCAGATTGCTAATCTAGGATAG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119079 lncRNA upstream 33444 2217200 ~ 2218096 (+) False AMCG00015102
TU119080 lncRNA upstream 33444 2217200 ~ 2218096 (+) False AMCG00015102
TU119049 lncRNA upstream 119647 2130738 ~ 2131893 (+) True G95464
TU119033 lncRNA upstream 154206 2095875 ~ 2097334 (+) False AMCG00015096
TU118986 lncRNA upstream 170703 1990628 ~ 2080837 (+) False G95415
TU119109 lncRNA downstream 15497 2268330 ~ 2268552 (+) True G95514
TU119115 lncRNA downstream 20461 2273294 ~ 2334520 (+) True G95516
TU119133 lncRNA downstream 97813 2350646 ~ 2351071 (+) True G95534
TU119216 lncRNA downstream 376834 2629667 ~ 2631659 (+) True G95603
TU119234 lncRNA downstream 404247 2657080 ~ 2657479 (+) True G95617
AMCG00015102 mRNA upstream 23589 2217691 ~ 2227951 (+) True AMCG00015102
AMCG00015095 mRNA upstream 114256 2117020 ~ 2137284 (+) True AMCG00015095
AMCG00015096 mRNA upstream 147686 2091675 ~ 2103854 (+) True AMCG00015096
AMCG00015092 mRNA upstream 229684 1995318 ~ 2021856 (+) True AMCG00015092
AMCG00015090 mRNA upstream 310781 1932410 ~ 1940759 (+) True AMCG00015090
AMCG00015103 mRNA downstream 6363 2259196 ~ 2259829 (+) True AMCG00015103
AMCG00015101 mRNA downstream 23879 2276712 ~ 2287242 (+) True AMCG00015101
AMCG00015105 mRNA downstream 201175 2454008 ~ 2461387 (+) True AMCG00015105
AMCG00015111 mRNA downstream 267491 2520324 ~ 2523197 (+) True AMCG00015111
AMCG00015115 mRNA downstream 368441 2621274 ~ 2634890 (+) True AMCG00015115
TU119071 other upstream 34438 2200937 ~ 2217102 (+) True G95486
TU118826 other upstream 654645 1582194 ~ 1596895 (+) True AMCG00015081
TU118644 other upstream 1312554 879089 ~ 938986 (+) True G95117
TU118603 other upstream 1704795 546229 ~ 546745 (+) True G95078
TU119235 other downstream 404652 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 411671 2664504 ~ 2666126 (+) True G95624
TU119325 other downstream 553978 2806811 ~ 2808495 (+) True G95693
TU119344 other downstream 567634 2820467 ~ 2823760 (+) False G95704
TU119395 other downstream 712468 2965301 ~ 2967327 (+) False AMCG00015142

Expression Profile