RNA id: AMCG00015117


Basic Information

Item Value
RNA id AMCG00015117
length 1143
RNA type mRNA
GC content 0.63
exon number 4
gene id AMCG00015117
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2660927 ~ 2670244 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCACTGTTTATACCGCGGAATCTCCTCCAGATAAGCTGAGTTCAACCCTAGAAGAACAGCGAGACGTCCGCCCAGAATTACCAGGCGGAGTGGAGGCCCGGGGGATCCTCGATGTTGCCTGCGGAGATCACCGGGATTTCGAGCGCTTGCAGACGCCGCAGGGGTTCAGACAACACACGGGCTCCGGGGCGTCTGATAACAGCGCAGGTGCTGAGATCCTTGGCTATGCAGAGTCTGAAGGGGGGGAGCACAGGCGAAGAGGAAGGGGAGGGATAGGAGAGGAAGAAGCTTTGGATCAAGACACACAGCTCTTAGGAGGTCCAGAGTTGGTGCAGGGGGTTAGGGGAGCCAAGGAAGGGAATAAGAGAGGGGTGGGGAGGTTTGGCTTGGGGGAGGGTGAGGGTGAGAGTgagggggaaggggaaggggaaggggaaggggaaggggcgGCAGCAGTGGCACTGACAGCGATGTACTCTCCCAGAGCTGATGAAGATCActggggaagaggaggaggaggagacgggGGGAAAGAGGAAGCGCAGGGGCTGGGGCAGTTACCAGGGCAAGAGCAGGTGCCGGGGCAGAAGCCATCTAGGCGGTGTCTGCAGTGCCGAGAATGTGGGCAGCAGTTCCCTCGGCGCGAGACCCTGGAGCTGCACTGGCTCTCCCACGCCCAGCAGAGGGTGCCGCATAGCCTGGCCTTCCAGCGCCAACGTGGTATGCTCTACAGCAGTCAGCAGCAACGCCTGCAGGCCGGAAGGTGGGCTGGGGGTGATGCAGGCAGAGAAGGACGGGCTGGCCGTGGAGGAGCAGGCAGTAGTAGCGGTGGAGTTGGCAGAGGTGGCGGTGGAGGAGTGGGCAGCCATCGCTGCGGTCCCTGTGGTCGCTCCTTTCCCAGTGCAGCCCGGCTGAGATCTCACCCGTGTCGGCTCCGCCCACAGCTGGAGAAGGCGTTCCGCTGCCCGCTTTGCCGCAAGGACTTTCGCTACAGCGTGTCAATCAATGCCCACATGCGCGCCCATTCGCTAGATGCCCCGTACCGCTGCCTGGAGTGTGGCAAGGGCTTTTCCTGTGGCCTGGCGCTGCACGCCCACCAGATCTCAGGTGAGAGGTCACACACAGGCTGGAAGCCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119226 lncRNA downstream 11354 2648459 ~ 2649573 (-) True G95612
TU119218 lncRNA downstream 27709 2632980 ~ 2633218 (-) True G95605
TU119143 lncRNA downstream 269055 2391569 ~ 2391872 (-) True G95544
TU119106 lncRNA downstream 397457 2263123 ~ 2263470 (-) True G95511
TU119103 lncRNA downstream 407197 2253437 ~ 2253730 (-) True G95508
TU119258 lncRNA upstream 6453 2676439 ~ 2676679 (-) True G95636
TU119259 lncRNA upstream 6938 2676924 ~ 2677129 (-) True G95637
TU119283 lncRNA upstream 27266 2697252 ~ 2697823 (-) True G95653
TU119306 lncRNA upstream 72332 2742318 ~ 2742602 (-) True G95675
TU119422 lncRNA upstream 204121 2874107 ~ 2875242 (-) False AMCG00015140
AMCG00015116 mRNA downstream 28 2643523 ~ 2660899 (-) True AMCG00015116
AMCG00015119 mRNA downstream 19678 2639239 ~ 2641249 (-) True AMCG00015119
AMCG00015118 mRNA downstream 23506 2628687 ~ 2637421 (-) True AMCG00015118
AMCG00015112 mRNA downstream 79946 2578074 ~ 2580981 (-) True AMCG00015112
AMCG00015114 mRNA downstream 128356 2528675 ~ 2532571 (-) True AMCG00015114
AMCG00015125 mRNA upstream 5795 2675781 ~ 2685577 (-) True AMCG00015125
AMCG00015124 mRNA upstream 15773 2685759 ~ 2693630 (-) True AMCG00015124
AMCG00015126 mRNA upstream 28274 2698260 ~ 2712770 (-) True AMCG00015126
AMCG00015123 mRNA upstream 48610 2718596 ~ 2720790 (-) True AMCG00015123
AMCG00015122 mRNA upstream 62800 2732786 ~ 2735205 (-) True AMCG00015122
TU119135 other downstream 309877 2350660 ~ 2351050 (-) True G95536
TU119057 other downstream 523475 2136420 ~ 2137452 (-) True G95472
TU119027 other downstream 567689 2090529 ~ 2093238 (-) False AMCG00015098
TU119032 other downstream 583560 2074142 ~ 2077367 (-) False AMCG00015094
TU118971 other downstream 681051 1964833 ~ 1979876 (-) False AMCG00015091
TU119334 other upstream 143661 2813647 ~ 2816067 (-) True G95700
TU119414 other upstream 218264 2888250 ~ 2891696 (-) False AMCG00015135
TU119447 other upstream 308211 2978197 ~ 2980408 (-) True G95791
TU119524 other upstream 516183 3186169 ~ 3189093 (-) True G95850
TU119528 other upstream 526435 3196421 ~ 3197189 (-) True G95854

Expression Profile