RNA id: AMCG00015134


Basic Information

Item Value
RNA id AMCG00015134
length 2454
RNA type mRNA
GC content 0.65
exon number 1
gene id AMCG00015134
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2931378 ~ 2933831 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTACCCCCTGAACATGAATGGCTACCCTGGGGTCTACTCCCCCCAGGCCCTGCTAGATTATACCAACTACGGGGACTCAGCAGGGGGGGGTGGGGCCTTCATCTGCACAGAATGCGGCGAAGGCTTCTCCCACTACCCCGACCTCCAGAGTCACATGACCCTGCATGGCACTACCGAACCCACCCCCTTCCACTACGCCGGCTTTGGCTACCCAGGGGAGGCAACGGTGGCAGGTGCGGGGGTCCAGTCCGCTCAGGGAAACCAGGACTTCAGTGTGGCAGGCGGGTACGGCGGCCCGATCCAGTTCACCTTGCAGGAAAACGGCACCCTGACTGTAGTGGAGGCTTCAGGGGAATTCGACACCTATGGCACCACCGCCACCGCTGCCCACCAGGCAGACTCCCATGCTTGGGGGCAGGCTGGGCGGACGTCTCGTGCCACTCAGACCCAGGAGTCGCCCACTGCTCAGCTGGTGCCGCCGCCGCCAAAATCCCACACAGAGAATGGACCAGGCCCCCCTCGGAACAGCGccgcccctcccccaccccGTTTCCGGTGCCAGACCTGCGGCCGCTGCTTCAACACGAGGCCTGGCCTGCAGCGTCACCGCCGCTACCGGACCTCGGAGCGCGGTCACAAGTGTGCCCTGTGTTGCCGGTCCTTTGGGGAGCGGACAGAGCTGCGGGCCCACCTACATGCCCATGCCAACCAGCACTCCTATGGCTGTGGCCGCTGCGGCAAGCGCTTCCCCAGCCTGGAGGCCCTGGAAGCCCACCGGCAGAGCCAGcatggaggaggggagggggcgGTGCAGGAGGTGGAGTCCGGAGCAGTgaggggggcaggggcaggggctgACAACTGCCCTGAGTGGTACTACCCTTGCCAGGAGTGCAGCCTGCGTTTCTTCTGGCTGTCAGACCTCCAGAGCCACCGCCACAGGCACCATGCCACCGCCACTGCCCGGCACATCCCTGGCCCCGGACACAGACCCCCAGCATTCCGCCAGAGACAGGAGGATGAGGAGGTAGAGGAGTTAGTGGAGGAGGAGGCGAGAGGTACCCCGACAGTTCCCGAAACCAACCGCCCATTAACACCCCCCAAGCCGACCTCCAAACTCTCCCTGCCACCTCACACACGGCTACAAACCTTTCACCCCTATCGCCCTCCTACACAGCCTCCCCCAGTCCTGAAGCCCTATTGCTGTGGTCTGTGTGGCCGGCGCTTCCAGTTGGTGTCTGAGCTGAAGAGGCACCACTCTGTACACCTGGGGCCTGGGCGGCGGCGCGGATATGGCCCCCCGAGCGTGGGAGTCGGTGGTGGCAGTTTTGTTCTCGGCGGGGGCGTGTTTCGAGAGagggggcgggggagggggcGAGGgaaaggcagagggagagaagggagcggagggaggggaagggggcgAGGGATGGGGACGGGGACGGGgccaggggtcaggggtcaccaGGCCCGTACCTTCCCCTGCAAGTACTGTGGCCGCACCTTCCTGCACTCTAGCAGCCTTTCCAGACACACGCGCTTCCACACGGGGGACAAGCTGAACCACTGTGGAGTCTGTGGCAAGAGCTTCATCCAGCTGTGCGACCTGGAGCGGCATAGCCACACCCATGGCCCCAGGAGGACGGACACTGACAAagtagagagggagagggagagctggCTCTCTTGCCCAGGTTGTGGGGAGTCATTTCTTGGAGATGCCGGCTTGCGGGAGCACAGGTGCCTCGTCAACGGCCTCCCACCCCCCCTGCCCTTGCCCCCTGCTCCCATCCCTCTCACTGCTCCCGACCTGCCTCCCtctgtccccctcccccactccaCTCATGCTCTCTCAgccccccttcctctctcctcctcctcctcctccacatcctccctccccctctccacgGGTCCCACTCACTCCTCCCTCCGCACCACCTGCCctaacccctccccctctcccattCCCTCCCCCTCACCACGCGTCATCTTCCGCTGCTCGGTGTGTGGCAAGGGCTTTGGCCTGCTGAGCGTCTACCAGCGCCACCAGCGCTACCACTACCGGGAGAGCGGCACGTACCCGTGTGCCCAGTGTCCCCGCACCTTCCGCCAGCCTTCCGCCCTGCACCGCCACCTGGCCTCCCATAGCTGCCGCTCCCCCCGAGCCCCAGGGGGCCAGGATGCTGCCCTCCCCAGCACTGTCGCGACCACCATCAAGGCCAGAGCTGCTTCGGATACAGCACCCATCCCACTCTctattcctcctcctccacatgAAATTGAGTTGgcagcagaggaggaggaggaagaggaggaggggaaggaggaggaggataaGGCTCCGTCTCAAGTGCTGTACGAATGCACCGAGTGTCACCAGACCTTCACCTGCCTGGGGACGTTCCTGCAACACCAGAGTGTGCACGAGAGTGAGGCAAGGCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119346 lncRNA upstream 98617 2831750 ~ 2832761 (+) True G95706
TU119341 lncRNA upstream 100757 2820467 ~ 2830621 (+) False G95704
TU119338 lncRNA upstream 107618 2820467 ~ 2823760 (+) True G95704
TU119343 lncRNA upstream 107618 2820467 ~ 2823760 (+) False G95704
TU119323 lncRNA upstream 115164 2813701 ~ 2816214 (+) True G95692
TU119387 lncRNA downstream 5093 2938924 ~ 2939121 (+) True G95740
TU119389 lncRNA downstream 8826 2942657 ~ 2942901 (+) True G95742
TU119402 lncRNA downstream 59843 2993674 ~ 2994171 (+) True G95753
TU119500 lncRNA downstream 308357 3242188 ~ 3244332 (+) True G95828
TU119513 lncRNA downstream 316485 3250316 ~ 3250524 (+) True G95839
AMCG00015128 mRNA upstream 73621 2852458 ~ 2857757 (+) True AMCG00015128
AMCG00015120 mRNA upstream 203063 2722609 ~ 2728315 (+) True AMCG00015120
AMCG00015115 mRNA upstream 296488 2621274 ~ 2634890 (+) True AMCG00015115
AMCG00015111 mRNA upstream 408181 2520324 ~ 2523197 (+) True AMCG00015111
AMCG00015105 mRNA upstream 469991 2454008 ~ 2461387 (+) True AMCG00015105
AMCG00015133 mRNA downstream 18912 2952743 ~ 2962840 (+) True AMCG00015133
AMCG00015142 mRNA downstream 33096 2966927 ~ 2971345 (+) True AMCG00015142
AMCG00015141 mRNA downstream 42555 2976386 ~ 2984926 (+) True AMCG00015141
AMCG00015143 mRNA downstream 54824 2988655 ~ 3000677 (+) True AMCG00015143
AMCG00015147 mRNA downstream 150537 3084368 ~ 3089951 (+) True AMCG00015147
TU119344 other upstream 107618 2820467 ~ 2823760 (+) False G95704
TU119325 other upstream 122883 2806811 ~ 2808495 (+) True G95693
TU119243 other upstream 265252 2664504 ~ 2666126 (+) True G95624
TU119235 other upstream 272627 2657485 ~ 2658751 (+) True G95618
TU119071 other upstream 714276 2200937 ~ 2217102 (+) True G95486
TU119395 other downstream 31470 2965301 ~ 2967327 (+) False AMCG00015142
TU119665 other downstream 708109 3641940 ~ 3642200 (+) True G95955
TU119711 other downstream 1035998 3969829 ~ 3971683 (+) False G95992
TU119757 other downstream 1155370 4089201 ~ 4100140 (+) True G96030
TU120035 other downstream 1942290 4876121 ~ 4879896 (+) True G96264

Expression Profile