RNA id: AMCG00015136


Basic Information

Item Value
RNA id AMCG00015136
length 1435
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00015136
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2925485 ~ 2928277 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTTCGCTTTTTATTTGACTCCCATTGTCGCTCTGAACGTTCAACCCGTGCCCCATGCACCTCCGGCGGCCGAGACTGGGGATTCTCCTGGGTTGTGCCGCGGGGGGCTGCTGAAGAaggaggtggtggaggaggaaatGGAGTTGGTGCAGATTAAAACAGAGGAGGGAGAGACTGTGAGACTTGGGAgGAAGTCATGGGCTGTGTGGGAGCAGGATGATGTGGTGGCGCTGATCGCTGCGTGGGGGCAGGCAGGGGTGCAGCGCGATCTCCGCCAGACGATCAGAAACATCCGCGTGTTCGAGCGCATCGCTGCGGAGCTACGGCGCAAGGGCCTGGAGCGCAGCGCTGTGCAGTGCCGCCTGAAGATCAAGAAGCTCAAGTCGGAGTACAATAGGGTCCAGAAGAGCGGCGCCAACCCGAAGACCTTCCGCCACTACCAGCAGCTCCACCGCATCCTTGCCCAGTCTGAGGAGGAGCTGGGACCAGCACCGGCTCCCCAGGCAGACGGGGACTGTGCCCCAGACGTAGAGGGGGATGCAGTGCCCAGCCACGGCCTGCACAACGACGTGCAAACCCATGGCAATACGCAAGCGCTCGCACAGACCAGGTTTCTGCCAGACGCAAGTCCGAGCGGGGTAGAGGGGTCGGGGGTCACGAAGCATTCGCGTGTGGAGGAGTGTAGTGGGGGGGCTGTGGGTCTCCCCCCAGCGGAACCTGCAAGCACAGCCAGCGCTGGTGTTGCCTTGGTTACTGTCCCCCTGGTCAACTCCCTCTCAGATTCCCCACCCAGGCCCTATCGAAAGCGGCGCCGGTGCAGCCCGGCCCGCTGCTCCCTGACGGACCTGCTGGAGTACCTGCGGGAGGCGGACCAACGCCTGTTGTCCCTGCAGGCCCAGTTCATCGAGTCAGAGAGACGTGAGCGCCAGCTGGACCGGGCCGCTGCCACCCAGAACCAGGAGATGCTGTGCGGCCTGCTGAATCGCCTGTTGGAGGCCTGCACCCACTGCACCCGCTGTGGCACCAGCACCGGGATGCCTGGGACTGGACCAGGAAACTCAGGACCAGACAAGAATGCACAACAAACAGCAGCACAGGATATAGGGCTGGACTGATACTGGGCTGGGCTTACCTTAACTGAGTTGGGTTGTGCTGGACTGAGCCTGGGTTGGGCATGCTGGCACTGGACTAGAGACTACAGCAATACTACACAACACTACTCTACTGCTTCAGTAACACTGTCTGGGAAAGCAGACGCAAACACAGACAGCGAGAGAGAAACGGGAGTGATAAATGTTGTGAGAGAGATGCTtgaatacagagagagagaatgaaaaatgtgaacttgtgttggctttgttttttttttattttgttttgtcatgttCATAATCAAATCTCAAATGGgtcaataaacattttattaaaata

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119422 lncRNA downstream 50243 2874107 ~ 2875242 (-) False AMCG00015140
TU119306 lncRNA downstream 182883 2742318 ~ 2742602 (-) True G95675
TU119283 lncRNA downstream 227662 2697252 ~ 2697823 (-) True G95653
TU119259 lncRNA downstream 248356 2676924 ~ 2677129 (-) True G95637
TU119258 lncRNA downstream 248806 2676439 ~ 2676679 (-) True G95636
TU119436 lncRNA upstream 8017 2936294 ~ 2939095 (-) True G95780
TU119434 lncRNA upstream 14810 2943087 ~ 2945852 (-) True G95778
TU119442 lncRNA upstream 32058 2960335 ~ 2963345 (-) True G95786
TU119456 lncRNA upstream 65397 2993674 ~ 2994155 (-) True G95798
TU119476 lncRNA upstream 197154 3125431 ~ 3127592 (-) True G95814
AMCG00015139 mRNA downstream 2973 2915988 ~ 2922512 (-) True AMCG00015139
AMCG00015138 mRNA downstream 15071 2905065 ~ 2910414 (-) True AMCG00015138
AMCG00015137 mRNA downstream 21853 2893323 ~ 2903632 (-) True AMCG00015137
AMCG00015135 mRNA downstream 33858 2887584 ~ 2891627 (-) True AMCG00015135
AMCG00015140 mRNA downstream 46493 2875186 ~ 2878992 (-) True AMCG00015140
AMCG00015144 mRNA upstream 72539 3000816 ~ 3008611 (-) True AMCG00015144
AMCG00015154 mRNA upstream 307228 3235505 ~ 3239525 (-) True AMCG00015154
AMCG00015153 mRNA upstream 313833 3242110 ~ 3247588 (-) True AMCG00015153
AMCG00015152 mRNA upstream 322704 3250981 ~ 3268761 (-) True AMCG00015152
AMCG00015158 mRNA upstream 375480 3303757 ~ 3313326 (-) True AMCG00015158
TU119414 other downstream 33789 2888250 ~ 2891696 (-) False AMCG00015135
TU119334 other downstream 109418 2813647 ~ 2816067 (-) True G95700
TU119249 other downstream 255241 2666225 ~ 2670244 (-) False AMCG00015117
TU119135 other downstream 574435 2350660 ~ 2351050 (-) True G95536
TU119057 other downstream 788033 2136420 ~ 2137452 (-) True G95472
TU119447 other upstream 49920 2978197 ~ 2980408 (-) True G95791
TU119524 other upstream 257892 3186169 ~ 3189093 (-) True G95850
TU119528 other upstream 268144 3196421 ~ 3197189 (-) True G95854
TU119619 other upstream 421602 3349879 ~ 3350442 (-) True G95921
TU119671 other upstream 676326 3604603 ~ 3607192 (-) False AMCG00015164

Expression Profile