RNA id: AMCG00015137


Basic Information

Item Value
RNA id AMCG00015137
length 5433
RNA type mRNA
GC content 0.62
exon number 9
gene id AMCG00015137
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2893323 ~ 2903632 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGCTCCGCCCACAGAGCCCGCTCCGCCCACAGAGCCCGCTCCGGCCACGCAGCCCGCTCCGCCCACAGAGCCCGCGCCGACCAAGCAGCCCTCTCCACCTACAGAACCCCCGCCGGCCAAGCAGCCCTCACCAGCCACAGAGCCCATGCCTGCCTCGCAGCCCTCACCAGCCACTCAGCGCTCACCACCAGCCAGTGGGAGGATGCTGGAGCAGGAAGAGCTGAGAGAAGAGCTGAAAATACTGCAGGGGGAAGAGCgaggggagaggcaggaggagggcACAATGCTGGGTGAGGGGCTGGAGGACCAGAGAGAGCAGGAGCAATTGCAAGATGGGGGGTGTCCGGTTGGACTACAGAGTGGCTTACAGTTGCACCAGGCAGCAGGAAGCTCGAGACTGGGCCAGCTGCGGGGCAAAGGGAGCCTGGAGAAGGAGCAGCTGCCAGGTCAAGGATTGGAGCAGACGCAGAGCTCACCCCTTGAGGTTGAGAGCTCCCAGCTAGAGCAGCCACATATGGGCCTgagcccagagctggagcagcaaTGGAGCCCCCAGTTGGATGACAAGGGGAGTCTGGACCAACCACAGCAACATGCCTTGCAAGAGGACCCAAAGCAGCACAGCTCACCCCAGGACCAGCAGCAGCCACCCCAGCAGCCATGGCAACAGTGCAGTGTGCAGCTGGACAGGCCAGCACAATTCTCCCCAGTTCTCTCTGCGCTAGAGGCCCCTCCTACACAGCAGCCTCACCCACTCCCGTCTCCCCAGAGACCCCCCCAGAGCCGTCAGAATGCAAACCCTCAAGCATGCACACAGCAAACCCGTTGCCTGGAGCTGGGGAAAGAGGAGGCCCCGCTACCCCCTCCGTCCTCCTCATCTTCCTCTGCCTCTTCCTCTGCTCATTCAGCCCCCCGCCCTGCACAACGGGGAAGGAAGCGCCGGGTAGGGGTGCTGTGTCGCCCCACGCCTGCTAAGCGGCAGGGACTGGGATGCGAGGAGTGTGGTCAGAGGTTCGAGGGGACGATTGGGCTGAGAGGAcatagagagagggagcacagacagggagagggggagggtatgacggaggaggaggagagaatgGTTGAGGGAGAGGGTGATGAGGAGAGAATTAGAGCGGGGCAGAAGGAACGAATGGGAGAGGTGAAGGAGGACCGTATGCGAGAAAAAGCGGCAGAGAAGAAGAGCACAGGGAAGGGAGCAGGAAGGAAGAGGAAAGGACAGGgaaagaagagaggagagggacagaaagagagtttgggaaagagaaagggagatgGCATGAGGGAAGTGGCAGGGAGGGAGGAGCAGGATTTGCgagctccccccaccccaacacatTGTCCAGCAAGGAATGCCACAGGTAGAACCCGAAGTTCTCCACGGAACCCCCCACCGACCAATCCCACCCCTTTTCCCCGTGCAGACTCGTCTCCAAGGGGCAGGGGCCGGAGAGGGGCGGGTTCAAGGACGTCACTGCAGGCCGTCCCCCACCACCAGGAGAAGGAGGGATCGAGAGGACTAGAGAGGGAGACGCCACCTGTACCTCCATCCCAGCTTCTCGATCCCAGTTTGCATCTGCCTCTGATTTCCACTGcgacagaggaagaggaggatgctGGCATGAGGAAGAGGACATCGacaaagaggaggaagaggaggaggaatcCACCTCCACAGCCCGAGGAGGAGGTGGAAGAATCCCAGGCTTTGGTGAGGAGATCGGTCGGAATGTCGCAGGATTCAAGAGTCCGGGAATGGAGACTAGGactggaggaggaagaagagaaggagaaagaagaagaagaagaggaggaggaggaggaggaggaggaagacgagTTTGGACAACCAGGGTTTAAGAGGAGggcagtgggagagagggaggtgggagAGGAGGGGCAGAGGGCAATGGAAGAAGGGGATATTTTTCCACGTGTGGATGACTCTCCGCCTCCTCCCCCTCTTGCCCTCTCAAACCAGGGCCAGAGCAGTATTGGAACCAGAACTCCGGGTTCAGAGGGGGCGGCACAGAATGGACCTGTGGCACAGCCTAGGGATCACTCTGCTCCTGAGCGAGGAGAAAGGGAGGAACCGGCACTGACACTGAAacagcctcctcctccctcctctgcctccctcgctctcctcctcctgcctcaCCCTGGacaagaggagggagagaaggaacgAGAGATCAAGCAGGAGCTTCTGGACCAGGTAGCCGCTGGACAACAGCACCAACAGCCCAGTGGGGACCAACCGAGTCCAGTTGACATGGCTGTCCAGAACCAGACAACTCAACCTGGATGCTGGCTTCAAGAAGAGGACGAAGAAGCAGGAGAGACTGCACTGAGTGGGCTGGGCCAAGCAGGGCCCCAGAACCTGAGCCAGGGGGGTCCAGAGACTGGTCCATTTCCCACAGGGACAGGCACTGGTTGTACTGGGCCATGGAGGTCAAAGGGCACACAAGAGCGAGAGACTGAGACCGGGCAGACAGGGGCCATCAaactggaggaagaggaggtgcaagtgggggaggaggagaggtggAGGAAAGGGAAGAGGATGCAGGGGGAACAGGCTGAAGGAGGGGGAGgaaaggaaggaggaggagttgGAGTGCTGAGGGGGAACGAGGGACGgcaggggcagagagagggggaggatgAGGATGGGGTGAGAATGGGGCAGGTGGGCGCTGGGGGGCTCCTGTTCAGATTGGAGTCACCGATGGAAACCTGCGGTAtaaaggaggaggagatgggggAAGGGGTAGAGCTGGGAGCATTTTTCCAGACTTCCACTGCTGTCATAGAGGGTCTGACATTGCATCTACACccgggagagggaggaggaggaagaggagcatTGTCTTCCTCTCTGGAGGAGGAGTGTCCTGAGGAGCAGATTGTCTTTGAACTGGAAGCCATGACCACCACTGTGGAGGTGCTGAAGTcagaggaaggagagggggaggaggacaAGGCACAGGCAGTAGGGgacggaggaggagggagggtgTCCCATTCCTCCGTCTTGCTGGAGGGCTTCTTCCCGCCGGCGGTGGCGCTgggtggaggagaggagagtgggGTTGAGAGGATGGGCAATGATGGGGACTGTGAGACAGAGTCCCTGAGTTTTAGGGAACAGTCTGTGGTCCCTGGGCAGCTCAGTCTGATGGAATCTCTGGGGGGCCGAGTGATCAAAGTGGAGGAGGTCCCACCCGAGGCAGAGGAGGGTGCCCCCCCTAGCCAGGTGAGGGAAAGTGGAGAGGGGGGGCCGGAGGAGGCTGTGGATGGCGGGGTGTGTGTATTCTTGGTGAAGGAGGAGGACCCCTTGGTGTTGGACGAACCCCAATTTCTGCACCACATCCAGACTGATCAGGAGACACAAGGGCCAGATTCAGTCAAGCTCCCGGAGAGGGGAAAcagggcaggaggaggaggagtgagagaggggCCCTGTGAACAAGGCATGTTCCCCCtggtgaaggaggaggagagagaggtggaggtACAGCGAGAGAGCACGCCTGGGGTGatCTCAGGGCAGACTTGGCCACAGATGGAAGAGGAACTAGAGCACAGCGGCCAACAAGAGCCTGAGCCACGATCCACACCACTGCCTGCCCCTCACCCTGCCCCTCACCCTGCCCCTCACCCTGCCCTCACACAGCCCAATGAGGAGAGGGGTGCTGGGGAGCTCGTGATGGAGGgaagtgagagggagagagagggactgacacagagagagtcACTCAGAGTCAACTCTCATTTCCACAGAGAGAGCggtaGCCCACAAAACCTTCCAGAGCACCTGGGTTCCGCTCTAGAATGTGGCGGGGATTTAGAAGGCTGTGAGTCCGAGCCGGAGGAGGAAGCGGTTGCCATGGCGCATTTCTATGTgaaaaaggaggaagaggaggaggactgGGATGGAGTCGGGGCCCCCCCCGCAGATGAGCTGAGCTGGCCTGGGGTCCGAGAGCATCGTTGGAGCAGAGACAGGgtcagtgtgtgggggggacgCTCTCCCTTGCAGTGTTTCTCTCACTTCCTGGACTTGGGGGTGTGGGAGGGTGTGGCCCGCTGCAGCTACATCCAGCCGGTCCCCTCAGCCAATGAGGTCGCCAGGCTGttcCCTAGCTCCAGACTGTACTGGCAGAGCTCTACCCGTGTACCCCTGATCGCCGACGCCCTGTCAGACACCCGCTACCGCCAGCTGATGAGGGGCCTGAGACTGACACAGGAGAGACTGGGGACAGAGGCGGGCTCCCGCAGCGAGGGTGGACTGGGGCCGGTGGTGGCCAGGGTGTGCCAGGGGTGCAGGGAGCTGCCCAGGGAGAGGCGATGTGCGGTGGCAGAGCTCGCAGTGCCCCTGGGGAGGAAGGAGAGCCAATATCGGAACATTGTCCTGGTGGGGGCCAGCGGGAGAATCCTGGACTTCTGGAtccaagaggaggaggaggaggaggaagaggaggagagaaggggtATGGCCTGGGTGATCTCCAAGGTGACAGAGACCCTGCAGGGCCAGGGGGAGGGTAGGGCCTGTGTGTTCCTGTGTGGGCGGGGCTACGCCTCAGCCCCCGTGCTGGACCGCCTCCTCCTGTCCGGAGTGTACGGCACAAGCTGGGCAGAGGtaggaaggagggagggggaggaggaggagagggagaccaGATGGGAGGAGCTGGTGAGAGCAGATGGGAGGATGGTGCTGGTGCGGAATGAGAGAGGGGCATACCTGTCCACCTTTGTGGGTGGGGGCGGGGAGGAAGCGCCAGAGGGGGGTGTTGATGGTGTCCCGGAAGTTTGTCGGCAGTACCGGGCCTCCACTCGGGGCGCTGGGCTGACCCGCCGGCTCCTGGGCCTGTACCGGACCCCGGGGAGTTGTGCTAGACCTTCAGACCCCACCCAGGCGGTTCTGTGGCACTTGGTGGATTTGGCTCTGGTGAACAGCTGGCTCCTATACAATGAAGGCCACACCGGCTCTGAGCATGACGACAGGGTCTCCAGGATCAGCCTCATGACGTTCAGACTGATGGTGGCTCAGGCACTGGTGGGGGGAGAAGGGGAGGCTGAGGAGGGGCAGGGAGCCTCGCCCCCCCCGCCATTGTTGCCgccgccgcctcctcctcctcgctctTCATCTcagtctcctcctcctcctgctgctcctATCCTCTCCCAGGCCCCCAGCCAACCCTCTGTCTCTTCCCCCTCCCTGGCTGCACGGTTCGATGGGCAGGGACATTGGCCGGAGCAGGGGGAACCCAGACACCCCTCCCCCTGTCATCGTAATGGCTGTGGCCGCCTGTGCAGCGTGCTCTGCCTCAAGTGCCACGTCTTCCTGTGCATCACCCATGGCAACAACTGCTTCTACAAATTCCACAGCCTGACC

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006281 DNA repair biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119422 lncRNA downstream 18081 2874107 ~ 2875242 (-) False AMCG00015140
TU119306 lncRNA downstream 150721 2742318 ~ 2742602 (-) True G95675
TU119283 lncRNA downstream 195500 2697252 ~ 2697823 (-) True G95653
TU119259 lncRNA downstream 216194 2676924 ~ 2677129 (-) True G95637
TU119258 lncRNA downstream 216644 2676439 ~ 2676679 (-) True G95636
TU119436 lncRNA upstream 32662 2936294 ~ 2939095 (-) True G95780
TU119434 lncRNA upstream 39455 2943087 ~ 2945852 (-) True G95778
TU119442 lncRNA upstream 56703 2960335 ~ 2963345 (-) True G95786
TU119456 lncRNA upstream 90042 2993674 ~ 2994155 (-) True G95798
TU119476 lncRNA upstream 221799 3125431 ~ 3127592 (-) True G95814
AMCG00015135 mRNA downstream 1696 2887584 ~ 2891627 (-) True AMCG00015135
AMCG00015140 mRNA downstream 14331 2875186 ~ 2878992 (-) True AMCG00015140
AMCG00015129 mRNA downstream 48810 2836730 ~ 2844513 (-) True AMCG00015129
AMCG00015130 mRNA downstream 58907 2830586 ~ 2834416 (-) True AMCG00015130
AMCG00015131 mRNA downstream 68647 2819872 ~ 2824676 (-) True AMCG00015131
AMCG00015138 mRNA upstream 1433 2905065 ~ 2910414 (-) True AMCG00015138
AMCG00015139 mRNA upstream 12356 2915988 ~ 2922512 (-) True AMCG00015139
AMCG00015136 mRNA upstream 21853 2925485 ~ 2928277 (-) True AMCG00015136
AMCG00015144 mRNA upstream 97184 3000816 ~ 3008611 (-) True AMCG00015144
AMCG00015154 mRNA upstream 331873 3235505 ~ 3239525 (-) True AMCG00015154
TU119414 other downstream 1627 2888250 ~ 2891696 (-) False AMCG00015135
TU119334 other downstream 77256 2813647 ~ 2816067 (-) True G95700
TU119249 other downstream 223079 2666225 ~ 2670244 (-) False AMCG00015117
TU119135 other downstream 542273 2350660 ~ 2351050 (-) True G95536
TU119057 other downstream 755871 2136420 ~ 2137452 (-) True G95472
TU119447 other upstream 74565 2978197 ~ 2980408 (-) True G95791
TU119524 other upstream 282537 3186169 ~ 3189093 (-) True G95850
TU119528 other upstream 292789 3196421 ~ 3197189 (-) True G95854
TU119619 other upstream 446247 3349879 ~ 3350442 (-) True G95921
TU119671 other upstream 700971 3604603 ~ 3607192 (-) False AMCG00015164

Expression Profile